Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1648 ATGAGGCGTCAAGTATTGGTAGTGAGAAGAACAGAAGATGGTGGAAGAGGGTCAAGCAGGAGAGTGAGATATGGAGAATGTCAGAAGAATCATGCGGCTAATGCTGGGGGATACGCCGTGGATGGCTGCCGGGAGTTTATGGCCAGCGGGCAGGAAGGCACAAGTGCTGCTCTTACTTGTGCTGCCTGTGGATGCCACAGAAACTTCCACAAGAGAGTACTGTTGGACACTGCTGGTGAGTCCTCTTCACCTCCTTCCAATGGGAATTGA 270 0.5185 MRRQVLVVRRTEDGGRGSSRRVRYGECQKNHAANAGGYAVDGCREFMASGQEGTSAALTCAACGCHRNFHKRVLLDTAGESSSPPSNGN 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1648 89 Pfam ZF-HD protein dimerisation region 22 73 IPR006456 -
Dere01g1648 89 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 24 73 IPR006456 -
Dere01g1648 89 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 23 72 IPR006456 -
Dere01g1648 89 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 18 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1648 Dere-ChrDere01 29872246 29872515 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1648 1 89 Zinc finger-homeobox gene family AT3G28917 57.000 6.15e-32 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dere01g1648 ZF-HD_dimer 7.7e-30 No_clan