Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1645 ATGGACATAACCCCCACAACAATCACCAGCATCACCCCCTCCAATACTGCCAGTACGAAATCCCCAGAACCTGACAGTGAAACTCCGACCCGGATCCAACCCGCCCCCACCAAGTCCTTGTCCTTCTCCAACGGCGTCCTCAAGCGCCACCACCACCATCATCAGAGACAGCCCGTGGCGGTTATCTACAAAGAATGCTTGAAAAACCATGCAGCCAGCTTGGGAGGCCACGCGCTGGACGGCTGTGGCGAGTTCATGCCCTCCCCCGACGCCAATTCCGCCGACCCGAGCTCCATCAAATGCGCCGCCTGTGGCTGCCATCGCAATTTTCACCGCCGTGAACCTGAGGAGCCCATTTCCCCAGCAACCCACGTAATCGAGTATCAGCCCCATCATCGGCACCACCCTCCGCCGCCTCCGCCGTTTCACGCTTCGAATCGGAGCCCGAATTCAGCTTCCCCACCTCCGATCTCCTCTTCCTACTACCCCTCCGCACCCCACATGCTCCTGGCTCTCTCCGCTGGCCTATCGGCTCATCCGGAGAGCACGGCTGCTCCTGCCAACGCTTTGGGGACGCCGAGCCCGAATGCAAGGAAGCGGTTTAGGACCAAGTTCACACAGGATCAGAAGGATAAGATGCTCCAGTTCGCTGAGAGAGTGGGGTGGAAGATGCAGAAGAGGGATGAGGAATTGGTGCAAGAGTTCTGCCATGAAGTTGGGGTGGACAGAGGTGTTTTGAAGGTTTGGATGCACAATAACAAGAACACTTTTGGCAAGAAAGATGCGATGAATGGTAATAGGAGCGTTCTTGAGCTAGACCAAAACAACATACCCAACAATGAAATCAACAACAACGGCGGTACCCAGGATCCCAATCATCACTACCAGAACGATAATGGAGCGAACGCCGGTACTAATGGGTCTTCTTCATCTTCTTGA 939 0.5538 MDITPTTITSITPSNTASTKSPEPDSETPTRIQPAPTKSLSFSNGVLKRHHHHHQRQPVAVIYKECLKNHAASLGGHALDGCGEFMPSPDANSADPSSIKCAACGCHRNFHRREPEEPISPATHVIEYQPHHRHHPPPPPPFHASNRSPNSASPPPISSSYYPSAPHMLLALSAGLSAHPESTAAPANALGTPSPNARKRFRTKFTQDQKDKMLQFAERVGWKMQKRDEELVQEFCHEVGVDRGVLKVWMHNNKNTFGKKDAMNGNRSVLELDQNNIPNNEINNNGGTQDPNHHYQNDNGANAGTNGSSSSS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1645 312 SUPERFAMILY Homeodomain-like 191 259 IPR009057 -
Dere01g1645 312 MobiDBLite consensus disorder prediction 276 312 - -
Dere01g1645 312 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Dere01g1645 312 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Dere01g1645 312 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Dere01g1645 312 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 39 256 - -
Dere01g1645 312 MobiDBLite consensus disorder prediction 129 159 - -
Dere01g1645 312 FunFam Zinc-finger homeodomain protein 2 187 259 - -
Dere01g1645 312 Gene3D - 187 258 - -
Dere01g1645 312 MobiDBLite consensus disorder prediction 1 41 - -
Dere01g1645 312 NCBIfam homeobox domain, ZF-HD class 198 255 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1645 Dere-ChrDere01 29858284 29859222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1645 1 266 ZF-HD Transcription Factor Family AT5G15210 54.613 3.60e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dere01g1645 ZF-HD_dimer 1.2e-28 No_clan