Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1622 ATGACAATGTCGATCGGATTCATCCCCCTGCTGGTGATGCTTTATGTTGTTCTTACAATTTCAGTTCATGGACAACAACAGACAGGCTTTATAAGTATTGATTGTGGAGGTCCAGAGAATTTTGAGTACACAGATGATACCACTCAAATAAAGTACAACACGGATGGAGCCTACATACAAACAGGGGTGAACAAAAACATTTCCTCTGAATACTCGTACCCCAAAAATCCCAATCTGCCATTACCACTTTCAGATCTCAGAAGTTTCCCGGAGGGAAAGAGAAATTGTTACACCTTGAAAGCTGGAGGAAGAGGCAGCTTACATTTGATAAGGGCCTATTTCTTGTATGGAAACTACGACGGAGAAAACAAGCTTCCAGAATTTGATCTCTATAATGGTGTCAATTTCTGGTGCACAGTGAGTTTCAAAAATGCTTCAGAGCAAGTCATAATGGAAATTATCAGCATGGCTGAGTCAGAAGTGACGAATGTTTGTCTTGTGAACAAGGGACTGGGAATTCCTTTTATCTCAGCATTAGAACTAAGACCACTGAATAGTTCTATTTATAAAACTGAGTTTGGGGCATCTGCTGCACTGTTACTTTTCAAAAGATGGGACATTGGAGCAATTAATGGTAGTGGTAGATATGAAGATGACATATATGACAGAATTTGGTACCCATACGGTTCATCTTCCTGGGATTCTGTCAGCACTTCTTATGCTATAAATGACAATAACAATGGCTATAGAGCACCATTTGAAGTCATTAGAACTGCTGCAACACCTAAGAATGTTAGTGCTCCTTTGGAAATCTCTTGGATAACAAATGATCCAAATTCAAAGTTCCATGTCTTCTTGTACTTTGCTGAAGTGGAGAAGCTTGAGATGAACCAACTAAGGAAATTCAGCATATCCTGGAATGAATCTCCTTTGTTTGGACCCTTAGTCCCAAGCTACTTAGCTGCTGCTACAGTATCTAATTTGAATCCTTTGACGGGACATGAACATCGAATTTCTCTTCATAGAACTGAAGATTCAACCCTTGCACCCATCCTTAATGCAGTTGAGGTTTATGAAACAAGAGTAAAGGATGCACTTCCAACATTTGACCAAGATGTAAATGCTATTATGGACATCAAAGAAGCATTTGGTGTACAAAGAAGCTGGGTGGGTGATCCGTGTGAGCCAAAGAACTTCACTTGGGAAGGCTTGACATGCAACTATAGCAAGTCACTTCCTCCACGAGTTATATCTCTGAATCTCAGCTCAAGCAGTTTGAATGGGGTGATAGCTTCTGCCATCTCCAATCTCTTGTCACTGGAATCATTGGATTTATCAAACAATACCTTATCAGGATCAATTCCTCAGTTTCTGGAAAAAATGAGATCCCTTAAATTTTTGGATTTGAAAGGCAACCAACTATCAGGTTCTGTCCCCACAACTCTCCTAAAAAGATCTAGGGCAGGATTGCTTACATTGAGTGTGGATGCCCAAAATCTTTGTAGCTCAGATAAGTGCGAGAAGAAGGTGAATATATTTGTTCCCATAGTTGCTACAATATCATCACTTCTGGTTCTCCTGATTGCTTTTATTCTCATCTGGAGACTAAGAAGAAATAGACAATCAGATAAGGAGACGTGTAAGGCCAACAGAGAAGGAAAACTAGTGGCATCAAAGAAGTGGCAATATAGTTATGCAGAGGTATTGGAGATCACCAACAACTTTCAACTGGTGATTGGAAAGGGGGGATTTGGGACTGTGTACCGTGGTCAGATGAAAGAGGGGAACCAAGTTGCAGTGAAGATGCTCTCTCCATCATCATCTCAGGGGCCAAGGGAATTTCAGACTGAGGCTGAGCTCTTGATGACAGTCCATCACAGAAATCTGGTTTCCTTCATAGGTTACTGCGATAATGGTGACAAGTTAGCACTCATATATGAGTACATGGCAAATGGCAACCTCAAAAATTATCTTTCAGAGAGCAATTCGCGTAGCTTGAGCTGGGGAAGGAGACTTCAGATAGCAATTGATGCTGCACAGGGATTGGAGTACCTACACCATGGATGCAAGCCACCTATAATACATAGAGACGTGAAGACTGCCAACATTCTCCTAAGTGAAAAGCTGGAAGCTAAGATAGCAGATTTTGGCCTCTCCAAGGTGTTTAAGAATGACACCAGAGACGTAGGATCTTCAGTCAATACAAAAGATGACAGAAATGCAGAATTTGCTGTTATGGGTACCAAAGGGTACCTTGATCCAGAATACTACAAATCAAGGAAGTTGAATGAGAAAAGCGATATCTATAGCTTTGGAATTGTTCTGTTGGAGCTAATTACAGGTCAACCTGCTGTGTTAAAAGGCAAGGAATCAGTTCACATACTTGAGTGGGTAAGACCTGAGCTTCGAAGAGGGAACTTGAGCAAAATTGTAGATCCAAGGCTGCAAGGTAAATACAGTGCATATTCTGTATGGAAGGCTTTAGGAGCAGCAATGGCATGCACTGCGTCAACCTCTATTCATAGACCTACAATGAGTTTTGTGTTAGCTGAGCTGAAAAAGTGTTTGGAAACAGAGTTGCCCAGTCAGAGTGAAATGTATTTGGTACCACCGCAGATCTATAGAGAATTGCATAGTTTGTCTGAAACATATTCTTTGGATGATGATTCTATCACCTATCCTTTCCCAAGATAA 2694 0.4091 MTMSIGFIPLLVMLYVVLTISVHGQQQTGFISIDCGGPENFEYTDDTTQIKYNTDGAYIQTGVNKNISSEYSYPKNPNLPLPLSDLRSFPEGKRNCYTLKAGGRGSLHLIRAYFLYGNYDGENKLPEFDLYNGVNFWCTVSFKNASEQVIMEIISMAESEVTNVCLVNKGLGIPFISALELRPLNSSIYKTEFGASAALLLFKRWDIGAINGSGRYEDDIYDRIWYPYGSSSWDSVSTSYAINDNNNGYRAPFEVIRTAATPKNVSAPLEISWITNDPNSKFHVFLYFAEVEKLEMNQLRKFSISWNESPLFGPLVPSYLAAATVSNLNPLTGHEHRISLHRTEDSTLAPILNAVEVYETRVKDALPTFDQDVNAIMDIKEAFGVQRSWVGDPCEPKNFTWEGLTCNYSKSLPPRVISLNLSSSSLNGVIASAISNLLSLESLDLSNNTLSGSIPQFLEKMRSLKFLDLKGNQLSGSVPTTLLKRSRAGLLTLSVDAQNLCSSDKCEKKVNIFVPIVATISSLLVLLIAFILIWRLRRNRQSDKETCKANREGKLVASKKWQYSYAEVLEITNNFQLVIGKGGFGTVYRGQMKEGNQVAVKMLSPSSSQGPREFQTEAELLMTVHHRNLVSFIGYCDNGDKLALIYEYMANGNLKNYLSESNSRSLSWGRRLQIAIDAAQGLEYLHHGCKPPIIHRDVKTANILLSEKLEAKIADFGLSKVFKNDTRDVGSSVNTKDDRNAEFAVMGTKGYLDPEYYKSRKLNEKSDIYSFGIVLLELITGQPAVLKGKESVHILEWVRPELRRGNLSKIVDPRLQGKYSAYSVWKALGAAMACTASTSIHRPTMSFVLAELKKCLETELPSQSEMYLVPPQIYRELHSLSETYSLDDDSITYPFPR 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1622 897 Gene3D Transferase(Phosphotransferase) domain 1 649 868 - -
Dere01g1622 897 Gene3D Ribonuclease Inhibitor 365 489 IPR032675 -
Dere01g1622 897 SMART serkin_6 573 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1622 897 CDD STKc_IRAK 579 854 - -
Dere01g1622 897 FunFam Leucine-rich repeat receptor-like protein kinase 549 648 - -
Dere01g1622 897 FunFam Leucine-rich repeat receptor-like kinase 371 502 - -
Dere01g1622 897 ProSitePatterns Serine/Threonine protein kinases active-site signature. 693 705 IPR008271 GO:0004672|GO:0006468
Dere01g1622 897 Pfam Leucine rich repeat 417 474 IPR001611 GO:0005515
Dere01g1622 897 PANTHER OS07G0107800 PROTEIN-RELATED 31 856 - -
Dere01g1622 897 SUPERFAMILY L domain-like 398 484 - -
Dere01g1622 897 ProSitePatterns Protein kinases ATP-binding region signature. 579 601 IPR017441 GO:0005524
Dere01g1622 897 ProSiteProfiles Protein kinase domain profile. 573 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1622 897 ProSiteProfiles Leucine-rich repeat profile. 439 461 IPR001611 GO:0005515
Dere01g1622 897 Pfam Protein tyrosine and serine/threonine kinase 577 798 IPR001245 GO:0004672|GO:0006468
Dere01g1622 897 Pfam Malectin-like domain 33 359 IPR024788 -
Dere01g1622 897 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 649 865 - -
Dere01g1622 897 SUPERFAMILY Protein kinase-like (PK-like) 559 852 IPR011009 -
Dere01g1622 897 Gene3D Phosphorylase Kinase; domain 1 556 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1622 Dere-ChrDere01 29559735 29563816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1622 10 883 Receptor kinase-like Gene Family AT4G29180 51.798 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Dere01g1622 Malectin_like 2.1e-105 CL0202