Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1621 ATGGGAAGAGCTCCCTGTTGTGACAAAGCTAACGTCAAAAGAGGGCCATGGTCACCTGAAGAAGATGCCACCCTCAAGAACTACCTCGAGAAACATGGCACTGGTGGTAATTGGATAGCTCTCCCCAAAAAAGCAGGTCTTAAGCGTTGTGGGAAGAGCTGTCGACTGAGATGGCTCAACTATCTCAGGCCTCATATAAGGCTTGGAGGTTTCACTGATGACGAAGACAAGATTATCTGCACCCTCTATGCTACCGTCGGAAGTAGGTGGTCTCTTATAGCTGCACAATTGCCTGGAAGAACGGACAATGATGTGAAAAACCACTGGAACACAAAGTTAAAGAAGAAGTTTCTGGCAGGAAACAGTACTACTGGCACCAGCAGCATGAGCAAGGGTACTAGTTATGTACAGTACTCATCTTTTCCCTCTCAACCACCTCAAGTTGAAGCCTTTGTGTTTGATCCCAAGAACTCAGCCTGTTTCGAACCTTGTGTTCTGGAGTTGGAGCAAAATCCAACTCCACTTGCAGCATCAAAACCTATGAAATCGGGAGTTTCAGATTTTGGCAGCAGCGAGATCGGTGAAAGTTGTAGTGTACCATATTCTAAGGAAGCTTCTACTTCTTCAGCTTGCTTGGCAGAACAGAAGGATCATACCAAATGGTTTGGATTTGAGCATGCTGGTCAATACGATGCAAGTATGCTTGATTTTGTATATGGTGATATCCTCGATGGCTTTGCTTCGCAAGACAGAAGCCAGCCAATTTGCCCCATCAACGATTGCTTCACAAATCAATAG 798 0.4536 MGRAPCCDKANVKRGPWSPEEDATLKNYLEKHGTGGNWIALPKKAGLKRCGKSCRLRWLNYLRPHIRLGGFTDDEDKIICTLYATVGSRWSLIAAQLPGRTDNDVKNHWNTKLKKKFLAGNSTTGTSSMSKGTSYVQYSSFPSQPPQVEAFVFDPKNSACFEPCVLELEQNPTPLAASKPMKSGVSDFGSSEIGESCSVPYSKEASTSSACLAEQKDHTKWFGFEHAGQYDASMLDFVYGDILDGFASQDRSQPICPINDCFTNQ 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1621 265 Gene3D - 70 136 - -
Dere01g1621 265 FunFam Transcription factor RAX3 7 68 - -
Dere01g1621 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Dere01g1621 265 CDD SANT 71 113 IPR001005 -
Dere01g1621 265 Gene3D - 7 68 - -
Dere01g1621 265 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Dere01g1621 265 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Dere01g1621 265 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Dere01g1621 265 CDD SANT 16 62 IPR001005 -
Dere01g1621 265 PANTHER OS09G0431300 PROTEIN 1 157 - -
Dere01g1621 265 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Dere01g1621 265 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Dere01g1621 265 SMART sant 67 115 IPR001005 -
Dere01g1621 265 SMART sant 13 64 IPR001005 -
Dere01g1621 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1621 Dere-ChrDere01 29555174 29556141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1621 1 118 MYB Transcription Factor Family AT5G65790 79.661 4.23e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere01g1621 Myb_DNA-binding 5.2e-14 CL0123