Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1619 ATGAAAAGATTGGGATGGATAATTGAAACATGCTGGCCTGTTGTTATGTTTATAAACGGGGTTAACCATTCCGCCTTCCCTGTAAGCATCCATAAACCATCCTCCGCTATGATGCTTGGAGAGCCCCATCGCGCAAATCCGACGGTTCATATACCCCCATGGCCGGTCCTCGATGATCAGATGCCGGAGATGTACACTACTTACCCTGTGAGTGGCGTCTCTGTCAACTCCGACAGCAATGCAAGCAATAGCGATTACTCTCCGTACTACTTGCAAGAAGCACTGACGGCATTCCAGCGCTATCTGCCGTCGAACGATGCAGATATTGACTCTGACTCTGAGATTCTGAGTCGAGAGTTGGATGCTCCGGTGGATGCCTATTCCTGCGATCATTTTCGCATGTTCGAGTTCAAGGTGAGGAGGTGCGCCCGTGGCAGGTCACATGACTGGACTGAGTGTCCTTATGCTCATCCTGGCGAGAAGGCTCGCCGGAGGGATCCGAGGAAGTATCACTATTCGGGAACAGCATGCCCCGATTTTCGCAAAGGAAATTGCAAGAAGGGAGATGCATGTGAGTTTGCTCATGGCGTGTTTGAGTGTTGGCTTCATCCGGCCCGTTATCGTACTCAGCCATGCAAGGACGGCACCAGTTGCCGCCGAAGGGTCTGTTTCTTTGCTCACACTCCGGAGCAACTCAGGGTCCTGCCTCAGCAAAGTCCTAGGGGTGCTAACTCCGCGGATTCTTATGATGGATCTCCTCTCAGGCAGGCGATTGAGTCTTCTTGTGCAAAAACGCTTCCATTCATGTCCTCTCCGGGGTCTATTTCCCCTCCTGCTACTCCTCCGGCGGAATCTCCTCCTATGTCGCCGATGACACAGTCTCTGAGCCGCTCTCTGGGTTCAAGCTCCATTAATGAGATGGTGGCTTCCCTGCGCAATTTGCAGCTTGGAAAGGTTAAGTCACTACCCTCTTCCAGAAATGTTCCAATGGGCTCCCCCTGCTTCGGATCCCCAAGGGGATCCGTGCTCCGACCCGGATTCTGTAGTCTCCCCTCTACTCCTACTGAGGCGCCAACTCGTTCTGGTTTCAACTATTTCGATCTCTGGGATCAGAGTTGCGAGGAGGAGCCTGTGATGGAGAGGGTGGAATCTGGAAGGGGCATACGGGCTAAGATGTTTGAGAAGTTGAGCAAGGAGAACTCTCTGGATCGATCGGGTACCGGCCCGTCTGGTGGAGCTCCGGATGTTGGATGGGTGTCGGAGCTGGTGAAGTAA 1275 0.531 MKRLGWIIETCWPVVMFINGVNHSAFPVSIHKPSSAMMLGEPHRANPTVHIPPWPVLDDQMPEMYTTYPVSGVSVNSDSNASNSDYSPYYLQEALTAFQRYLPSNDADIDSDSEILSRELDAPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRGANSADSYDGSPLRQAIESSCAKTLPFMSSPGSISPPATPPAESPPMSPMTQSLSRSLGSSSINEMVASLRNLQLGKVKSLPSSRNVPMGSPCFGSPRGSVLRPGFCSLPSTPTEAPTRSGFNYFDLWDQSCEEEPVMERVESGRGIRAKMFEKLSKENSLDRSGTGPSGGAPDVGWVSELVK 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1619 424 MobiDBLite consensus disorder prediction 271 300 - -
Dere01g1619 424 SMART c3hfinal6 171 197 IPR000571 GO:0046872
Dere01g1619 424 SMART c3hfinal6 206 229 IPR000571 GO:0046872
Dere01g1619 424 FunFam Zinc finger CCCH domain-containing protein 66 129 197 - -
Dere01g1619 424 ProSiteProfiles Zinc finger C3H1-type profile. 172 198 IPR000571 GO:0046872
Dere01g1619 424 MobiDBLite consensus disorder prediction 274 288 - -
Dere01g1619 424 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 176 196 IPR000571 GO:0046872
Dere01g1619 424 PANTHER UNKEMPT FAMILY MEMBER 89 424 IPR045234 -
Dere01g1619 424 MobiDBLite consensus disorder prediction 397 424 - -
Dere01g1619 424 Gene3D - 172 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1619 Dere-ChrDere01 29545997 29547935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1619 121 329 C2H2 Transcription Factor Family AT5G12850 49.074 3.23e-57 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere01g1619 zf-CCCH 4.3e-06 CL0537