Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1610 ATGAACAAGATGAGCCACTTGAGCTCTGTGAACAGTTGTGATCTGATAGATGCGAAACTGGAAGAGCATCAGTTGTGTGGATCCAAGCAGTGCCCTGGTTGCGGACACAAGTTTGAAGCCAAGCCGGACTGGCTAGGTCTTCCAGCTGGAGTGAAGTTCGATCCAACGGACCAAGAACTAATAGAACACCTCGAAGCCAAAGTGGAGTCCAAGAATATGAAATCTCATCCTTTGATCGACGAGTTCATTCCCACTATCGAAGGAGAAGACGGAATTTGTTATACCCATCCTGAGAAACTCCCAGGAGTAACAAGAGATGGGTTGAGCAGGCACTACTTCCACAGACCTTCGAAGGCTTATACGACTGGAACAAGAAAGAGGAGAAAAATCCAAAATGAAAATGAGATGCAAGGAGGGGAAACTCGATGGCACAAGACAGGGAAGACGAGGCCAGTGATGGTTAATGGAAAACAAAAGGGGTGCAAGAAGATTCTCGTACTCTACACCAACTTCGGCAAGAACAGAAAGCCCGAGAAGACCAACTGGGTCATGCACCAATACCACCTCGGACAGCACGAGGAGGAGAAAGAAGGAGAGCTCGTCGTCTCCAAGATTTTCTACCAGACACAGCCGAGGCAGTGTAACTGGTCGGATCGAAGTGCGACCACTGGAGAACCTAGTGGAGACTTCGCTAATAATAGTAGCAGAAGAGACAGTGGGAGTGGGAGTTGCTCTTCTTCCAAGGAGTTTAACGTTGTTGCTACTACTCACAGAGATGATCAGATGTCTGCGGTTGTTGGAGTTGTCCCTCCCATGTCATCCTACGCTCATCATCATCATGCTTTGGATATGCAACAACACTTCAAACCCGACCACTTTGGATTCATCCCATTCAGGAAAAGCTTCGACGAGGTGGGGATAGGAGAGGCTTCCATGGCAAGAGATCAAGTGCAGGCATCAGGCGAAGAAGTTCATGAAGGGCAGAGGCAACAACAGCATCATGTGGCTCAGCATCATCATCAGAATATGGCAAGCACAGCCTTTCATATAAGTAGGTCTTCACTTCCCATCTCTACCATGATCTCTCCGCCTCCTCTCCACCACGCCTCCATCATCCTTGACGACAACTCCTACCATGTCTCCAGAATTATGCTCCAAAATGACAACTTCCAGCAACAGCAGCAACAACATCATAAACTAGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATTATGGGGTGCACTTCGACTGATATTAAAGCGCAGGACTCATCCATCGCAAATCCACAAGAAGCTGAATGGTTGAAGTATTCATACTGGCCTGACCCTGACAACCCGGATCATCATGGATAG 1356 0.4808 MNKMSHLSSVNSCDLIDAKLEEHQLCGSKQCPGCGHKFEAKPDWLGLPAGVKFDPTDQELIEHLEAKVESKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHYFHRPSKAYTTGTRKRRKIQNENEMQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEPSGDFANNSSRRDSGSGSCSSSKEFNVVATTHRDDQMSAVVGVVPPMSSYAHHHHALDMQQHFKPDHFGFIPFRKSFDEVGIGEASMARDQVQASGEEVHEGQRQQQHHVAQHHHQNMASTAFHISRSSLPISTMISPPPLHHASIILDDNSYHVSRIMLQNDNFQQQQQQHHKLGGRSASGLEELIMGCTSTDIKAQDSSIANPQEAEWLKYSYWPDPDNPDHHG 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1610 451 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Dere01g1610 451 SUPERFAMILY NAC domain 41 208 IPR036093 GO:0003677|GO:0006355
Dere01g1610 451 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 12 337 IPR044799 GO:0003700
Dere01g1610 451 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Dere01g1610 451 FunFam NAC domain-containing protein 73 56 212 - -
Dere01g1610 451 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Dere01g1610 451 MobiDBLite consensus disorder prediction 214 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1610 Dere-ChrDere01 29418335 29422252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1610 13 448 NAC Transcription Factor Family AT5G56620 53.233 1.73e-137 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere01g1610 NAM 9.7e-24 No_clan