Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1608 ATGGAGAAGACATGGATTCTGGGTTTTGATCTCCTCCTCCTCCCCCTTTATCTCCATTTATATGCAGCAAAAGCAGCCTTTGGTGTGGGCGGTGGCATTGGCGTCGGAGTAGGTGTTGGCGGCGGAGGGGTTTGGATTGGCGGTGGCGGGGGCAACAGCCCTGCAGGGCCCTCGGGATCTTCTTCAGTGCCGAAGCCAGACAGAGCTTACACGGCTCTCCAGGCATGGAAATCCGCGATCATAGAGGACCCATTGAGGATTCTAGAGAGTTGGAATGGTGCAAACGTGTGTTCATATAAAGGGGTGTTTTGTGCGAATCCAGAGGGTGAAATGGCTGCATCAGGTGGGCCTGTGGTTGCAGGTATAGATCTCAACCATGCGAATCTCAAAGGAAGTCTTGTGAAAGAGCTCTCTTTGCTCACTGAAATGTCTCTTCTCCACCTCAACAGCAATAGATTTACGGGCACGGTTCCTGATACATTTAGAGACCTCTCGTCTCTTCAAGAGTTGGACCTCAGCAACAACCAACTTTCGGGTCCTTTCCCCACAGTTATTTTGTCAATGCGAAGTCTGGTTTATTTGGACCTCAGATTCAACTCCTTCTCCGGGCCCCTCCCCGATGATCTTTTCAACAAGAATCTGGATGCTATATTTCTCAACAACAATCAATTTGAAGGCGAAATCCCCCAAAATTTGGGTAATTCCCCTGCTTCAGTCATAAATTTAGCTAACAATAAGTTCAGTGGAAGCATCCCAGCGAGTTTTGGTTTCATGGGTTCTAAACTAAAGGAGATTCTCTTCCTCAATAACCAGTTGAGTGGGTGCATTCCCGAAGGAGTCGGGCTGTTCACAGAGATGCAAGTTCTCGATGTGAGCTTCAATTCACTAGTGGGTCATTTGCCAGACACGATATCATGCCTGCAAGATATAGAAGTTCTCAATTTGGCGCATAACGAGCTTTCTGGGGAATTACCGGACGTGATCTGCTCTCTGAGAAGCCTAGTAAATCTAACGGTTGCCTATAATTTCTTTTCTGGGTTCAGCCAGGAATGCTCGAGGCTTTTCTTTAGGAATGTGGGTTTTGATTTCTCAGTTAATTGCATTCCCGGGAGGAACATGCAGAGACCTCAACCGGAGTGTTCTGTGATCCCAGGTGGAAGCCTAAGTTGTCTCAGAATTCCTACACCAAAACCTCTTGTTTGTGGTTCGCTAGCTGTCAGTCTTTCTAAGCACACTCACCCATCTTCATCTTCTTCTCCTTGA 1263 0.4751 MEKTWILGFDLLLLPLYLHLYAAKAAFGVGGGIGVGVGVGGGGVWIGGGGGNSPAGPSGSSSVPKPDRAYTALQAWKSAIIEDPLRILESWNGANVCSYKGVFCANPEGEMAASGGPVVAGIDLNHANLKGSLVKELSLLTEMSLLHLNSNRFTGTVPDTFRDLSSLQELDLSNNQLSGPFPTVILSMRSLVYLDLRFNSFSGPLPDDLFNKNLDAIFLNNNQFEGEIPQNLGNSPASVINLANNKFSGSIPASFGFMGSKLKEILFLNNQLSGCIPEGVGLFTEMQVLDVSFNSLVGHLPDTISCLQDIEVLNLAHNELSGELPDVICSLRSLVNLTVAYNFFSGFSQECSRLFFRNVGFDFSVNCIPGRNMQRPQPECSVIPGGSLSCLRIPTPKPLVCGSLAVSLSKHTHPSSSSSP 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1608 420 FunFam Leucine-rich repeat extensin-like protein 1 70 234 - -
Dere01g1608 420 Gene3D Ribonuclease Inhibitor 238 375 IPR032675 -
Dere01g1608 420 FunFam Leucine-rich repeat receptor protein kinase EMS1 251 350 - -
Dere01g1608 420 Pfam Leucine rich repeat N-terminal domain 69 104 IPR013210 -
Dere01g1608 420 SUPERFAMILY L domain-like 70 353 - -
Dere01g1608 420 Gene3D Ribonuclease Inhibitor 67 237 IPR032675 -
Dere01g1608 420 PRINTS Leucine-rich repeat signature 167 180 - -
Dere01g1608 420 PRINTS Leucine-rich repeat signature 307 320 - -
Dere01g1608 420 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 60 407 - -
Dere01g1608 420 SMART LRR_typ_2 307 331 IPR003591 -
Dere01g1608 420 SMART LRR_typ_2 164 187 IPR003591 -
Dere01g1608 420 SMART LRR_typ_2 140 163 IPR003591 -
Dere01g1608 420 SMART LRR_typ_2 188 212 IPR003591 -
Dere01g1608 420 Pfam Leucine rich repeat 144 200 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1608 Dere-ChrDere01 29388354 29389616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1608 46 392 Leucine-rich Repeat extension Gene Families AT3G24480 49.292 1.38e-106 322