Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1604 ATGGCAGAAATAGCGAAAATAAGGGGTAATGGGAAGGGTACTATGAAGACCAGAGCAACAGCAAGACTCCTTATTTTCTCATCAGCCAAGCACGCAGATTTGCGAGAGATCAATCTCAACAACGGCATCATGTCGTGGCAAACTTACGTAGATGAGCACCTTATGTGCGATCTTGAAGGCAACCAACTCAGTGCTGCCGCTATCATTGGCCAGGACGGCAGCGTTTGGGCACAGAGCTCCAATTTCCCTGCGTTCAAGCCTGAGGAAATCACTGCTATCATGAATGACTTTGCTGAGCCTGGATCTCTTGCTCCAACTGGATTATATCTTGGGGGCACAAAGTACATGGTGATCCAAGGTGAGCCTGGTGCTGTCATTCGTGGGAAGAAGGGTCCTGGTGGTGTTACTGTCAAAAAGACCAATCAGGCCTTAATCATTGGCATTTATGATGAACCAATGACTCCGGGGCCTTTAATTCTCTTGGTATCAGAAGTCATGGAATCTGCTTGTGGCGAAGAAGTGTTTGGTGCTTGA 534 0.4757 MAEIAKIRGNGKGTMKTRATARLLIFSSAKHADLREINLNNGIMSWQTYVDEHLMCDLEGNQLSAAAIIGQDGSVWAQSSNFPAFKPEEITAIMNDFAEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTNQALIIGIYDEPMTPGPLILLVSEVMESACGEEVFGA 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1604 177 SMART prof_2 44 170 IPR005455 GO:0003779
Dere01g1604 177 PRINTS Plant profilin signature 127 142 IPR005455 GO:0003779
Dere01g1604 177 PRINTS Plant profilin signature 114 123 IPR005455 GO:0003779
Dere01g1604 177 PRINTS Plant profilin signature 70 83 IPR005455 GO:0003779
Dere01g1604 177 PRINTS Plant profilin signature 44 57 IPR005455 GO:0003779
Dere01g1604 177 PRINTS Plant profilin signature 95 109 IPR005455 GO:0003779
Dere01g1604 177 PRINTS Plant profilin signature 147 160 IPR005455 GO:0003779
Dere01g1604 177 PANTHER PROFILIN 44 165 IPR005455 GO:0003779
Dere01g1604 177 FunFam Profilin 44 169 - -
Dere01g1604 177 CDD PROF 45 156 IPR005455 GO:0003779
Dere01g1604 177 Gene3D Dynein light chain 2a, cytoplasmic 42 168 - -
Dere01g1604 177 Pfam Profilin 44 164 IPR005455 GO:0003779
Dere01g1604 177 PRINTS Profilin signature 64 73 IPR005455 GO:0003779
Dere01g1604 177 PRINTS Profilin signature 46 55 IPR005455 GO:0003779
Dere01g1604 177 PRINTS Profilin signature 83 103 IPR005455 GO:0003779
Dere01g1604 177 PRINTS Profilin signature 143 156 IPR005455 GO:0003779
Dere01g1604 177 PRINTS Profilin signature 107 121 IPR005455 GO:0003779
Dere01g1604 177 SUPERFAMILY Profilin (actin-binding protein) 45 165 IPR036140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1604 Dere-ChrDere01 29354615 29356720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1604 44 165 Cytoskeleton Gene Families AT2G19760 73.770 1.73e-65 195