LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g1602	ATGTCTGTTCTGCTTCCCACTATTTTGTGCGCTATATACAGGAAGAAAGGGAAAGGTACTGAGAAGCCAATGAGTGTTGCGAATGCTAATGATGCCAAGTCAAAACCTCTCTTTTTTGGAGGGTGGGCCTCCAGCTCAGTTAATCATCACTCAATTTTGTGTGGGGGAACCACAACTACTGTACCAAGAAAGATGAAGACCAAGACACCATTGAAGCAACTCAAGCTCGCTGTCCCTGCTCAAGAAACCCCCATCACCTCTTTCCTGACTGCGAGTGGCACGTTTCATGACGGAGATCTGCTTTTAAACCAGAAAGGATTGCGCCTCATATCTGAAGAAAAAGAATCGCGCCCTTCTGATGGTAAGGAACTTGATTTTGACTTCACACTGGAAGACCTTGAGACCATCAAAGTAATTGGAAAGGGCAGTGGTGGTGTAGTACAACTTGTTCGTCATAAGTGGGTTGGAAAATCATTTGCCTTGAAGGTCATTCAGATGAACATACAAGAGGAGATCCGTAAACAGATTGTACAGGAGCTGAAGATAAACCAAGCATCACAGTGTCCACATGTTGTAGTTTGTTACCACTCTTTCTACCATAATGGAGTCATATCTCTTGTGTTAGAATACATGGATCGTGGTTCTCTCGCGGATGTAATCAGACAAGTTAAAACAATTCTAGAACCATATCTTGCGGTTGTTTGTAAGCAGGTCTTGCAAGGTCTTGTTTACTTGCATCATGAAAGACACGTAATTCATAGGGACATCAAACCGTCCAATCTATTAGTGAATCACAAAGGGGAGGTGAAGATTACTGATTTTGGTGTTAGTGCTATGCTGGCAAGCTCAATGGGCCAAAGAGATACATTTGTTGGAACTTACAACTACATGTCGCCAGAAAGAATCAGTGGGAGTACTTACGATTATAGCAGTGACATCTGGAGTTTGGGCATGGTAGTACTTGAGTGTGCCATCGGGCGGTTTCCTTATATACAATCTGAAGATCAGCAAAGCTGGCCTAGTTTTTATGAGCTTTTGGAAGCAATCGTGGAAAGCCCTCCACCTTCTGCTCCGTCAGATCAGTTCTCTCCAGAGTTCTGTTCATTTGTGTCATCCTGCATACAAAAGGATCCTCGTGATAGATTGACATCTTTGGAACTTCTGGGTCATCCTTTCATAAAAAAGTTCGAAGAAAAAGATTTAGATCTTGGGATTCTGGTAGGCAGCTTGGAACCTCCTGGTCATAATCCAACTGCCCAAAGGAGAGTTCCAATGCAAAATGCATTTCAAGAAAATGAAGCAAATGTTTACGTTCTTGATAAGCAGAGAAAGCAGGATCTTTATCTTCTCCTTTTTGTTCTTGTTTTCATTCTTCTTCTTGACACAATGGATCAGAAGGCTAAGCAAATTTTTCTAGAAATGAACATGAACAGCGACTGGGTTGTTAAGGAAGATGGTGGTGATGATATTTGTGATCCAACATCCATTGCGTCCATCTTAGAAGATTCAATAGATTCAGTGTGTTCATCTTCTTCGTCAGAAATGACTGAGGACGCATCCTCTTCTGCAACTTATCTGTCAACCTCATGTTCATCATCACATTCAAATGGGCCTTTATATGAACTATCAGAGCTCATGACTCATCTACCTATAAAGAGAGGGCTATCTATGTTTTATCAAGGGAAGGCTCAGTCTTTCACATCTTTGGATAGGGTGCAGAGCTTAGAAGATCTTCCAAAGAAAGGTACACCTTACAACAAGAAAATGAAGTCATGTAAAAGCTATGGAGGTGGTTTGGATAGCCACAAAATATCATATTCTCCCAAGGCTACAATATCAAAGAAAGCTTCAAGGGGATCTTTTGTATCTTCTCTAAATAGAAGAGGGAGTTTCCTGGGAATGCATAGGCCTTCCATAGCTGCGCAGAAGAACTTTTGA	1938	0.4164	MSVLLPTILCAIYRKKGKGTEKPMSVANANDAKSKPLFFGGWASSSVNHHSILCGGTTTTVPRKMKTKTPLKQLKLAVPAQETPITSFLTASGTFHDGDLLLNQKGLRLISEEKESRPSDGKELDFDFTLEDLETIKVIGKGSGGVVQLVRHKWVGKSFALKVIQMNIQEEIRKQIVQELKINQASQCPHVVVCYHSFYHNGVISLVLEYMDRGSLADVIRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGSTYDYSSDIWSLGMVVLECAIGRFPYIQSEDQQSWPSFYELLEAIVESPPPSAPSDQFSPEFCSFVSSCIQKDPRDRLTSLELLGHPFIKKFEEKDLDLGILVGSLEPPGHNPTAQRRVPMQNAFQENEANVYVLDKQRKQDLYLLLFVLVFILLLDTMDQKAKQIFLEMNMNSDWVVKEDGGDDICDPTSIASILEDSIDSVCSSSSSEMTEDASSSATYLSTSCSSSHSNGPLYELSELMTHLPIKRGLSMFYQGKAQSFTSLDRVQSLEDLPKKGTPYNKKMKSCKSYGGGLDSHKISYSPKATISKKASRGSFVSSLNRRGSFLGMHRPSIAAQKNF	645

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g1602	645	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	251	263	IPR008271	GO:0004672\|GO:0006468
	Dere01g1602	645	SUPERFAMILY	Protein kinase-like (PK-like)	130	424	IPR011009	-
	Dere01g1602	645	Gene3D	Phosphorylase Kinase; domain 1	103	212	-	-
	Dere01g1602	645	CDD	PKc_MAPKK_plant_like	131	398	-	-
	Dere01g1602	645	FunFam	Mitogen-activated protein kinase kinase 6	103	212	-	-
	Dere01g1602	645	SMART	serkin_6	133	393	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere01g1602	645	FunFam	Mitogen-activated protein kinase kinase 6	214	412	-	-
	Dere01g1602	645	PANTHER	MITOGEN-ACTIVATED KINASE KINASE KINASE	79	510	-	-
	Dere01g1602	645	ProSitePatterns	Protein kinases ATP-binding region signature.	139	162	IPR017441	GO:0005524
	Dere01g1602	645	Pfam	Protein kinase domain	134	393	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere01g1602	645	ProSiteProfiles	Protein kinase domain profile.	133	393	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere01g1602	645	Gene3D	Transferase(Phosphotransferase) domain 1	214	409	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g1602	Dere-ChrDere01	29335482	29344449	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g1602	65	413	MAP Kinase Kinase Gene Family	AT5G56580	87.429	0.0	640

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Dere01g1602		Pkinase	3.9e-66	CL0016