Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1597 ATGTCGAATTTGCATCACATTTCCAATTTTTTACTACTACTTGTTCTTCTTCTGATGCAAAATCCGAGTATAACACTATGCCACACGAAGGGTATTAGACCAAAGCGTTCTTCTGGGAGTGCGTTGACGACTAACATGACCCGAATCCAAGACTCAGAACAGCAATTCATAAAATGGGTCAAGTTTGTTGGTAGCCTCAGACACTCTGTTTTCAGAACAGCAAAAAATAAGCTCTTTCCCTCTTACACTCTGCACGTCTACAAGAAGCCGTCTTCCGGACAATTTTCGTCGATTCAAGATGCCGTCGATTCCCTTCCCTTCATCAATCTCGTGAGAGTAGTCATAAAGGTCCACGCAGGGGTTTACACGGAGAAAGTGAACATTCCTCCTATGAAATCCTTCATAACCATACAAGGAGCAGGAGCAGACAAAACCATAGTTCAATGGGGAGACACAGCTCAAACACGAGGGCCAAATGGTCAGCCATTGGGAACTTATGGTTCAGCAACTTTCGCCGTGAATGCACCTTATTTCATTGCCAAGAATATCACATTCAAAAACACTTCCCCTGTTCCAGCGCCAGGCGCAGTTGGGAAGCAAGCAGTGGCATTGAGAATTTCAGCAGACACAGCAACTTTCCTAGGCTGCAAATTCTTAGGAGCACAAGACACACTCTACGATCATGTGGGCAGGCATTACTACAAAGATTGCTACCTCGAAGGCTCCGTAGATTTCATATTCGGGAACGCCCTCTCTCTGTTCGAGAGATGTCACGTGCATGCGATAGCGCAGAATACAGGCGCGGTAACAGCTCAGGGAAGGAGCAGTATATTGGAGGACACAGGGTTCTCGTTTGTGCACTGTAAGGTCACGGGATCAGGGGCACTGTACCTTGGGAGGGCATGGGGTCCCTTTTCTCGCGTGGTCTTCTCTTACACTAATATGGACAATATCATCATTCCCAAAGGCTGGTACAACTGGGGTGACCCTAACCGTGAAATGACTGTGTTCTATGGGCAGTACAAATGCACAGGACCAGGAGCCAGATTTGCTGGGAGAGTTTCATGGTCAAGAGAACTCACTGATGAGGAAGCTAAACCTTTTGTTTCACTTAGCTTCATTGATGGCTATGAATGGATCAGATTGTAG 1149 0.4639 MSNLHHISNFLLLLVLLLMQNPSITLCHTKGIRPKRSSGSALTTNMTRIQDSEQQFIKWVKFVGSLRHSVFRTAKNKLFPSYTLHVYKKPSSGQFSSIQDAVDSLPFINLVRVVIKVHAGVYTEKVNIPPMKSFITIQGAGADKTIVQWGDTAQTRGPNGQPLGTYGSATFAVNAPYFIAKNITFKNTSPVPAPGAVGKQAVALRISADTATFLGCKFLGAQDTLYDHVGRHYYKDCYLEGSVDFIFGNALSLFERCHVHAIAQNTGAVTAQGRSSILEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFSYTNMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGARFAGRVSWSRELTDEEAKPFVSLSFIDGYEWIRL 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1597 382 FunFam Pectinesterase 80 382 - -
Dere01g1597 382 Pfam Pectinesterase 90 376 IPR000070 GO:0030599|GO:0042545
Dere01g1597 382 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 77 381 - -
Dere01g1597 382 Gene3D - 82 382 IPR012334 -
Dere01g1597 382 SUPERFAMILY Pectin lyase-like 80 380 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1597 Dere-ChrDere01 29277104 29279162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1597 1 380 Carbohydrate Esterase AT5G47500 44.619 1.54e-104 311