Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1596 ATGGGAAGAGCCACCCGGTGGTTGAAGAGCTTGTTTGGGATTAAGAAAGACAGAGACCGCAAAGAAAATTCACATTCAGAGAGAGATCCCAGAGGGTTATGTCATAATCCTGCCACTATACCACCAAACATCTCACCTGCAGAGGCTGCTTGGCTACAATCATTCTACACAGAAACAGAGAAGGAGCAGAACAAGCACGCAATTGCGGTGGCCGCAGCCACTGCAGCTGCCGCTGATGCCGCCGTAGCAGCTGCTCAGGCCGCGGCGGCGGTGGTTAGGCTGACCAGCCACGGCAGAGGCACCATGTTCGGTGGTGGGGGACACGAGAGCAGGGCTGCCGTGAAGATTCAAACAGTATTTAGGGGTTACTTGGCAAGGAAGGCTCTGAGAGCCTTGAAAGGATTGGTGAAGTTACAAGCACGTGTGAGAGGCTATCTAGTGAGGAAGCAAGCCACAGCAACTTTGCACAGTAAGCAAGCTCTTATCAGGTCTCAGAAAGCTCGCAGCAGGCTCATGAACAAAGCCAATGAAGCCCGAGCACGAAGATCCATGGAGAGATTTGACGACACAAGGAGTGAGTACACAGCTCCCGTTCACAGCAGAAGAATGTCATCTTCTTTTGATGCAACAATTAATAACACTAACAGTGTTGATGGAAGCCCCAAAATAGTGGAAGTGGACACTGGCAGGCCTAAATCGAGGTCTCGAAGGACCAACACTTCAATTTCCGATTTTGGCGATGACCCACAATTCCAAGCACTTTCCTCTCCTCTCCCAATCCCTTGTTGTCGCACTCCTGCTCGCTTATCGATACCGGACTACCGCCGGAATCTGCAGGACTCCAATTGGGGGTTGACGGCGGAAGAATGCAGGTCGTCGACGGCGCAGAGCACTCCTCGGTTCACCAATTCTCGTGGGTCTATTATTCCTCCGGCGACGCCTTGCAAGAGCATTTGCGCCGCCGACGGGTTTTACCGGCAATACGGGAACTTTCCGAACTACATGGCGAATACTCAATCCTTCAGGGCGAAATTGAGGTCTCATAGTGCTCCGAAGCAAAGGCCAGAACCGAAGAAGAGGGTTTCGTTGAACGAATTGATGGAGTGTAGGAGTAGCTTGAGTGGAGTTCGAATGCAGAGGTCTTGCTCGCAGGTTCAGGAAGCCATTAACTTCAAGAATGCCGTGATGGGTAAGCTTGAGAAGTCTGCTGAATTTGGCCGAGATACGGATAGGGGTTACTTGCAGAGGAGGTGGTGA 1257 0.5171 MGRATRWLKSLFGIKKDRDRKENSHSERDPRGLCHNPATIPPNISPAEAAWLQSFYTETEKEQNKHAIAVAAATAAAADAAVAAAQAAAAVVRLTSHGRGTMFGGGGHESRAAVKIQTVFRGYLARKALRALKGLVKLQARVRGYLVRKQATATLHSKQALIRSQKARSRLMNKANEARARRSMERFDDTRSEYTAPVHSRRMSSSFDATINNTNSVDGSPKIVEVDTGRPKSRSRRTNTSISDFGDDPQFQALSSPLPIPCCRTPARLSIPDYRRNLQDSNWGLTAEECRSSTAQSTPRFTNSRGSIIPPATPCKSICAADGFYRQYGNFPNYMANTQSFRAKLRSHSAPKQRPEPKKRVSLNELMECRSSLSGVRMQRSCSQVQEAINFKNAVMGKLEKSAEFGRDTDRGYLQRRW 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1596 418 ProSiteProfiles IQ motif profile. 109 137 IPR000048 GO:0005515
Dere01g1596 418 MobiDBLite consensus disorder prediction 176 196 - -
Dere01g1596 418 MobiDBLite consensus disorder prediction 17 38 - -
Dere01g1596 418 MobiDBLite consensus disorder prediction 176 250 - -
Dere01g1596 418 MobiDBLite consensus disorder prediction 235 250 - -
Dere01g1596 418 Pfam IQ calmodulin-binding motif 111 130 IPR000048 GO:0005515
Dere01g1596 418 Pfam IQ calmodulin-binding motif 136 150 IPR000048 GO:0005515
Dere01g1596 418 Gene3D - 108 160 - -
Dere01g1596 418 Pfam Protein of unknown function (DUF4005) 293 376 IPR025064 -
Dere01g1596 418 MobiDBLite consensus disorder prediction 197 221 - -
Dere01g1596 418 PANTHER IQ-DOMAIN 5-RELATED 1 364 - -
Dere01g1596 418 SMART iq_5 108 130 IPR000048 GO:0005515
Dere01g1596 418 SMART iq_5 131 152 IPR000048 GO:0005515
Dere01g1596 418 MobiDBLite consensus disorder prediction 17 32 - -
Dere01g1596 418 ProSiteProfiles IQ motif profile. 133 160 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1596 Dere-ChrDere01 29267134 29268574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1596 1 378 IQD Protein Family AT3G16490 52.073 6.41e-97 293