Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1583 ATGACGAATATGCTGTCTCTGGATATCTTCCTCCCTCCTTCTCAGAAACATAAATGCTCTTTCTGCGTTATTGCCAGTTTGAGCTCAGAAATAGTTGACAGGAGCAAAATGGGTTCCTCAAAAAGGGAGGTGGTAGAGAAGGGAGAGACAAGGGGAAAAGAGGGAGCTTCGAATAATTCTATAGCCATAATTTTCAGATATGCAGATTGGATTGATGTGGTGCTTGTGGTAATGGGTGCTTTGGGAGCAATAGGAGATGGCATGTCCACAAACGTATTGCTGATATTTGTTAGCCGTATTATGAACAGCTTGGGTTATGGGAATAGCCAGCAAAATAGTGGAAATTTCATGGCTGAGGTTGAAAAGTGCAGTTTATACTTTGTCTACTTGGGATTAGCAGCCATGGTGGTAGCCTTCATGGAAGGGTATTGCTGGAGCAAAACAAGCGAGAGGCAGGTGCTGAGAATTCGATACAAGTATCTGGAAGCTGTGCTGAGACAAGAAGTGGGGTTATTCGATTCCCAAGAAGCAACCACTTCAGAAATCATCAACAGCATATCAAAGGACACTTCGCTCATCCAGGAGGTTCTAAGTGAAAAGGTACCCCTATTCTTTATGCACTCAGCGTCGTTTATCTCAGGGATTGTATTCTCTGCATACTTCTGTTGGAGGTTGGCCTTAGTGGCATTCCCTACACTGCTTTTGCTGATTATTCCTGGAATGCTGTATGGCAAGTACCTTATCCATTTGTCAAAAAAGTCTTATAAGGAGTATGGCAAAGCAAACACCGTTGTAGAACAGGCTCTGAGCTCCATTAAAACTATATATTCCTTCACTGCGGAGAAGAGAATCATCGAGAGGTATTCAGCTATACTAGACAGAGCTTCAGGGCTAGGAATCAAGCAAGGCATAGCCAAGGGTCTAGCTGTAGGAAGTATGGGTCTCTCTTTCGCAATCTGGGCTTTTCTTGCTTGGTATGGAAGCCGTTTGGTTATGTACAAAGGTGAAAGCGGAGGAAAGATCTACGCAGCTAGCGTCACCTTCATAATGAGTGGACTATCCCTTGGAGTGGCACTTCCTGAGCTCAAATACTTCACAGAAGCATCTGTTGCTGCTTCACGCATATTTGACATGATTGATCGGATACCTACCATTGATGGTGAAGACACAAAAGGACTTGTGTTAGAACGCACAAGTGGGAAGATAGAATTTGAGCATGTCAAATTCACATACCCTTCTCGTCCAGAAACAATTGTACTGAGGGATTTCAACCTCAGAGTTGAGGCAGGGAAAACTGTTGCCCTGGTTGGGTCTAGTGGAAGTGGCAAATCCACTGCAATAGCATTAGTGCAGAGATTTTATGATGCAGATGAAGGTGTTGTAAGAATTGATGGTGAAGACATAAGAAGCCTACAGTTGAAATGGATTAGAGGGAAAATGGGGCTTGTGAGTCAAGACCATGCACTTTTTGGAACATCTATAAAAGAGAATATCATGTTTGGGAAGCCTGATGCCACAATGGATGAAGTAGTTGCTGCAGCCACTGCTGCCAATGCTCATAACTTCGTAAGGCAGCTTCCTCAAGGTTATGAGACCAAGATTGGAGAAAGGGGGGCACTTCTATCAGGTGGACAAAAGCAGAGAATAGCCATTGCAAGAGCCATCATAAAGAATCCGGTAATTCTTCTACTTGATGAAGCAACTAGTGCTCTTGACTCTGAATCTGAATCACTGGTTCAAAATGCCCTTGATCAGGCCTCCATGGGAAGGAGCACATTGGTTGTGGCCCACAAGCTATCAACTATTCGAAACGCAGACCTCATAGCAGTCGTCAATGGTGGCTGCGTCATTGAAACAGGAACCCACGACGAACTCATAAACCGCCCAAATGGCCACTATGCAAAACTAGCAAAATTACAGAGACAACTGAGCTGTGATGAACAGGAACAAAATCCAGAACTGGGCATTTCTTCAGTCGCAAGAAGCAGTGCTGGCAGACCAAGCACTGCCATGTCAAGCCCTGCCATCTTCCCAAAATCACCCTTACCTGACGCCTCTTCTGATCTTGTGTCTGACCCTCCACCTTCGTTTCGTCGTCTTCTTTCTCTGAACGCATCTGAATGGAAACAGGGTCTGATTGGAAGCCTCTGTGCTATATCCTTTGGCTCAATTCAACCCATATATGCCGTAACCATCGGGGGTGTGATTTCTTCATTTTTTGTCGAAAGCCATGAGGAAATGCGTCGAAGGATCAGGACTTATTGTTTGATATTCTCATTCCTCTCCCTTGCTTCTGTTATCCTCAATCTCATTCAACACTACAATTTCGCTTATATGGGAGAGAAGTTAACGAAAAAGGTCAGACTGCGCATGCTGGAGAAGATCTTAACCTTTGAAACTGCTTGGTTCGAGGAGGAACAAAACTCAAGTGGAGCCTTATGCTCAAGGTTGAGCAATGAGGCTTCCATGGTCAAGTCACTCGTTGCAGATCGAATTTCTCTATTAGTACAAACCACCTCTGCCGTCACAATCGCAATGATCATAGGGATTGTGGTGGCATGGAAGCTGGCTCTTGTTATGATAGCAGTTCAACCACTAGCAATCCTCTGCTTCTACACACGAAAGGTGTTGCTCTCTGCACTTTCAACCAAATTTATCAAGGCTCAAAACCAAAGCACCCAAATTGCAGTAGAAGCAGTTTATAACCACAGAATTGTATCTTCATTCGGAAGCATCAGAATAGTGCTGAAACTCTTTGATGAGGCTCAAGAGGCACCGAGGAAGGAAGCGAGGAAGAAGTCATGGCTAGCTGGGATAGGAATGGGTTCTGCTCAGTGCCTAACCTTCATGTCATGGGCTTTGGATTTCTGGTTTGGAGGCACGTTGGTGCAGAAGGGAGACATATCAGCAGGGGATGTGTTCAAGACATTCTTTGTATTGGTCAGTACCGGCAAGGTCATAGCCGACGCCGGAAGCATGACCTCTGACCTCGCCAAAACATCAACGGCAATCGCCTCTGTCTTTGAAATCCTTGATCGTCAATCACTAATTCCCAGGGCTGGAGATGGCATTAGTGGGCGTAAGCTAGAAAAAATGAACGGGAAGATAGAGATGAAGAACGTTGATTTTGCATATCCAAGCAGGAGAGAGACCCCAATATTGCGAGAGTTTTGCTTGGAGATGAAGGCAGGAACCAGTATTGGACTAGTCGGGAAGAGTGGCTGTGGCAAATCAACAGTGATAGCTTTGATCCAAAGGTTCTATGAAGTGGACAGAGGGTACGTGAAAGTGGACGGCGTAGACATAAGGGAATTAGACACTTACTGGTACAGGCAACACACAGCACTTGTTAGCCAAGAGCCTGTGATATACTCAGGTAGTTTAAGGGACAACATATTGTTCGGGAAGGAAGACGCCACAGAACATGAAGTGGTGGAGGCTGCAAGAGCTGCAAACGCTCACGAGTTCATCTCATCACTGAAGGATGGATATGAAACGGAATGTGGGGAGAGAGGAGTGCAGCTTTCAGGAGGGCAGAAGCAGAGGATAGCGATTGCAAGAGCGATAATCAGAAAGCCAAGGATACTACTGCTAGATGAGGCAACCAGTGCTCTGGATGTGCAATCAGAAGGGATAGTGCAAGAAGCACTAGATAGGATTATGGTTGGGAGGACTACAATTGTGGTGGCACATAGACTAAACACCATTATGCACCTTGACTCCATTGCCTACATTGCAGACGGCAAGGTTATGGAGCGAGGAACCTATGCCCGCCTAAGGCATATGAGAGGTGCCTTCTTCAACCTTTCCACACATCAGACTTAG 3825 0.4541 MTNMLSLDIFLPPSQKHKCSFCVIASLSSEIVDRSKMGSSKREVVEKGETRGKEGASNNSIAIIFRYADWIDVVLVVMGALGAIGDGMSTNVLLIFVSRIMNSLGYGNSQQNSGNFMAEVEKCSLYFVYLGLAAMVVAFMEGYCWSKTSERQVLRIRYKYLEAVLRQEVGLFDSQEATTSEIINSISKDTSLIQEVLSEKVPLFFMHSASFISGIVFSAYFCWRLALVAFPTLLLLIIPGMLYGKYLIHLSKKSYKEYGKANTVVEQALSSIKTIYSFTAEKRIIERYSAILDRASGLGIKQGIAKGLAVGSMGLSFAIWAFLAWYGSRLVMYKGESGGKIYAASVTFIMSGLSLGVALPELKYFTEASVAASRIFDMIDRIPTIDGEDTKGLVLERTSGKIEFEHVKFTYPSRPETIVLRDFNLRVEAGKTVALVGSSGSGKSTAIALVQRFYDADEGVVRIDGEDIRSLQLKWIRGKMGLVSQDHALFGTSIKENIMFGKPDATMDEVVAAATAANAHNFVRQLPQGYETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESESLVQNALDQASMGRSTLVVAHKLSTIRNADLIAVVNGGCVIETGTHDELINRPNGHYAKLAKLQRQLSCDEQEQNPELGISSVARSSAGRPSTAMSSPAIFPKSPLPDASSDLVSDPPPSFRRLLSLNASEWKQGLIGSLCAISFGSIQPIYAVTIGGVISSFFVESHEEMRRRIRTYCLIFSFLSLASVILNLIQHYNFAYMGEKLTKKVRLRMLEKILTFETAWFEEEQNSSGALCSRLSNEASMVKSLVADRISLLVQTTSAVTIAMIIGIVVAWKLALVMIAVQPLAILCFYTRKVLLSALSTKFIKAQNQSTQIAVEAVYNHRIVSSFGSIRIVLKLFDEAQEAPRKEARKKSWLAGIGMGSAQCLTFMSWALDFWFGGTLVQKGDISAGDVFKTFFVLVSTGKVIADAGSMTSDLAKTSTAIASVFEILDRQSLIPRAGDGISGRKLEKMNGKIEMKNVDFAYPSRRETPILREFCLEMKAGTSIGLVGKSGCGKSTVIALIQRFYEVDRGYVKVDGVDIRELDTYWYRQHTALVSQEPVIYSGSLRDNILFGKEDATEHEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQKQRIAIARAIIRKPRILLLDEATSALDVQSEGIVQEALDRIMVGRTTIVVAHRLNTIMHLDSIAYIADGKVMERGTYARLRHMRGAFFNLSTHQT 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1583 1274 ProSitePatterns ABC transporters family signature. 1175 1189 IPR017871 GO:0005524|GO:0016887
Dere01g1583 1274 Pfam ABC transporter 420 569 IPR003439 GO:0005524
Dere01g1583 1274 Gene3D ABC transporter type 1, transmembrane domain 64 1003 IPR036640 GO:0005524|GO:0016020
Dere01g1583 1274 SUPERFAMILY ABC transporter transmembrane region 64 386 IPR036640 GO:0005524|GO:0016020
Dere01g1583 1274 FunFam Putative ABC transporter B family member 8 678 1021 - -
Dere01g1583 1274 CDD ABC_6TM_Pgp_ABCB1_D1_like 77 375 - -
Dere01g1583 1274 ProSitePatterns ABC transporters family signature. 541 555 IPR017871 GO:0005524|GO:0016887
Dere01g1583 1274 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1036 1272 IPR003439 GO:0005524
Dere01g1583 1274 Gene3D - 1026 1274 IPR027417 -
Dere01g1583 1274 MobiDBLite consensus disorder prediction 655 677 - -
Dere01g1583 1274 FunFam ABC transporter B family member 4 392 649 - -
Dere01g1583 1274 Gene3D - 392 641 IPR027417 -
Dere01g1583 1274 FunFam ABC multidrug transporter SitT 1026 1274 - -
Dere01g1583 1274 Pfam ABC transporter 1057 1203 IPR003439 GO:0005524
Dere01g1583 1274 CDD ABC_6TM_Pgp_ABCB1_D2_like 701 1017 - -
Dere01g1583 1274 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 712 999 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g1583 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 392 640 IPR027417 -
Dere01g1583 1274 SUPERFAMILY ABC transporter transmembrane region 694 1012 IPR036640 GO:0005524|GO:0016020
Dere01g1583 1274 CDD ABC_MTABC3_MDL1_MDL2 402 640 - -
Dere01g1583 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1029 1273 IPR027417 -
Dere01g1583 1274 PANTHER ABC TRANSPORTER B FAMILY 40 758 IPR039421 -
Dere01g1583 1274 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 77 367 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g1583 1274 Pfam ABC transporter transmembrane region 713 982 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g1583 1274 Pfam ABC transporter transmembrane region 79 347 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g1583 1274 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 402 638 IPR003439 GO:0005524
Dere01g1583 1274 FunFam ABC transporter B family member 1 63 399 - -
Dere01g1583 1274 MobiDBLite consensus disorder prediction 655 675 - -
Dere01g1583 1274 SMART AAA_5 1063 1249 IPR003593 GO:0016887
Dere01g1583 1274 SMART AAA_5 429 630 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1583 Dere-ChrDere01 29142383 29149394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1583 77 641 Calmodulin-binding Proteins AT2G36910 36.538 5.52e-104 357