Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1580 ATGGAATCCAACCTAAGGCAGCCCTCGCCTCCAGACCTCCTGTCTTTCTCTCTCGCCCACATCATGGAGCAGCCCTTGCACTGGGACTTGGACGACTTGCAACTCGAGCGAGTCGACTCCGAGTCGGCCCTTTCTAGTTCCGCTTCCGGCTCCACCGTCTCCTTCATACTTGGCACCGAGGATTCCCGGAGTACCACCAGCTCCGGCGACATTTCCACAATCAGCACCAGCTCCGGCGACATTCCGGGGGTTGTGATTCCCGAGGCAGTGCCGTCGCCTCACTTGCTCGATCCTGTTCCGTCCGAGGAGACGAGGGCGAGGAGGGAGAAGTGCGTGGGAAGGAATAACAAGGGATTGAGTTGGGGATTTACGTCGGTGATTGGAAGGAGGAAAGAGATGGAGGACGCTATAGCTGTTATCCCAGGGTTTATGTCCCTCACGTGCGATCACGTCGGAGGATGTACGGCTCCTTCCTCGAGATACTCCGGTGAGATCTCACCCGTTCATTTCTTCGGCGTCTACGACGGCCACGGTGGATCTCAGGTGGCTAAATTCTGTGCCAAACGGATGCATGAAGCTATAGCAGAAGAGTGGGATCGAGACATAGCTGAGAGCCCTGAATGGAAGGGAAGGTGGGAGGCCGTTTTTGCTAGTGGCTTTCAGAAGACTGACAATGAAATCCTAACAGATGCAGTTGCACCAGAAATGGTAGGATCTACTGCTGCTGTGGTGGTTCTATCTCGTTGCCAAATCATTACATCTAACTGTGGCGACTCAAGGGCAGTTCTTTACCGTGGCACACAGACAATCCCATTAACAGTGGATCAGAAGCCTGATAGACAAGATGAACTATTGAGAATTGAAGGAGGAGGAGGAAAAGTCATAAACTGGAATGGAGCTAGGGTGTTTGGAGTTCTTGCCATGTCCAGGGCCATAGGTGATCGGTATTTGAGGCCGTGGATTATTCCAGTTCCTGAGACAACTTTTACAACCAGAAGTGAGGAGGATGAGTGTTTAATATTGGCTAGTGATGGGCTTTGGGATGTTATGACGAATGCAGAGGTTGGGGAAGTTGCACGCCATATTCTAAGAAGGCGTCGAAGGTCCTTGTCCTTGGAAGAAACTTCACCGGCACAAGTTGTTGCTGATAGCCTCACTGAGATTGCGCATGGTAGAAATAGTAAAGACAATATTTCAATCATAGTTATTGATCTGAAGTCAAAGAGAAAGCGTCAGCAAAGGCCACCTTTGATTTCCTAA 1260 0.5071 MESNLRQPSPPDLLSFSLAHIMEQPLHWDLDDLQLERVDSESALSSSASGSTVSFILGTEDSRSTTSSGDISTISTSSGDIPGVVIPEAVPSPHLLDPVPSEETRARREKCVGRNNKGLSWGFTSVIGRRKEMEDAIAVIPGFMSLTCDHVGGCTAPSSRYSGEISPVHFFGVYDGHGGSQVAKFCAKRMHEAIAEEWDRDIAESPEWKGRWEAVFASGFQKTDNEILTDAVAPEMVGSTAAVVVLSRCQIITSNCGDSRAVLYRGTQTIPLTVDQKPDRQDELLRIEGGGGKVINWNGARVFGVLAMSRAIGDRYLRPWIIPVPETTFTTRSEEDECLILASDGLWDVMTNAEVGEVARHILRRRRRSLSLEETSPAQVVADSLTEIAHGRNSKDNISIIVIDLKSKRKRQQRPPLIS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1580 419 PANTHER PROTEIN PHOSPHATASE 103 405 IPR015655 GO:0004722|GO:0006470
Dere01g1580 419 MobiDBLite consensus disorder prediction 89 109 - -
Dere01g1580 419 Pfam Protein phosphatase 2C 123 398 IPR001932 -
Dere01g1580 419 Gene3D - 107 415 IPR036457 -
Dere01g1580 419 SMART PP2C_SIG_2 149 405 IPR001932 -
Dere01g1580 419 FunFam Protein phosphatase 2C 51 113 413 - -
Dere01g1580 419 SUPERFAMILY PP2C-like 112 406 IPR036457 -
Dere01g1580 419 ProSitePatterns PPM-type phosphatase domain signature. 170 178 IPR000222 GO:0043169
Dere01g1580 419 CDD PP2Cc 122 405 IPR001932 -
Dere01g1580 419 SMART PP2C_4 109 403 IPR001932 -
Dere01g1580 419 ProSiteProfiles PPM-type phosphatase domain profile. 120 405 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1580 Dere-ChrDere01 29103572 29111486 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1580 121 415 PP2C-type Phosphatase Gene Family AT4G26080 49.206 3.96e-97 296