Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1562 ATGGCTGAGCTACCATGCTCAGAAACAGAGACAAGCATTCACATTAACTGGTCCTCACACTCTCCATCATCATCGTCGTCATCATTATCTGGGTTATCACAGTGTCTACCAAATTCCACTTCTGAACCATTACCCACAGAACAGAGGAAGCCCAAACGAGCGAGAGATGGCACCAGCAAACACCCCGTGTACAGAGGAGTCCGAATGCGGGCATGGGGCAAGTGGGTATCCGAAATCCGGGAGCCCCGCAAGAAGAATCGGATCTGGCTCGGCACCTTCAACACTCCGGAGATGGCGGCGCGAGCCCACGACGTGGCCGCACTCGCCATCAAAGGCAACTCCGCCATCCTCAACTTCCCGGAGCTCGCGGGTTCTCTGCCCCGACCCGCTTCCAACTCGCCCCGAGATGTTCAAGTCGCCGCTGCAAAGGCCGCTTCCATGGAGGTATTCAATCCCCCGACGACGTCGCTTTCGTCTTCCTCTTCGTCGTCGTCTTCATTGGCAATGTCGTATTCCTCCTCCGGCGACCCGTCCACCCCGGAGGACCTCGGCGAGATAGTGGAGCTGCCGCATTTGGGTACTAGTTTCGACTCGCCCGACCCGAGTAATGATTTCGTGTTCTTGGACCCGGTTGATGGGTGGCTCTATCCTCACCCGTGGTATCACAGCATTTATGATGACAGGGATTGTGGTGGGTATTTCCTTGGGGATCACACATCAATGCAAGAAGCAGAGAGCAACGTTCTGTGTGGATTTGAGGGTTCGTTGTGGCAACATTAA 780 0.5526 MAELPCSETETSIHINWSSHSPSSSSSSLSGLSQCLPNSTSEPLPTEQRKPKRARDGTSKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFNTPEMAARAHDVAALAIKGNSAILNFPELAGSLPRPASNSPRDVQVAAAKAASMEVFNPPTTSLSSSSSSSSSLAMSYSSSGDPSTPEDLGEIVELPHLGTSFDSPDPSNDFVFLDPVDGWLYPHPWYHSIYDDRDCGGYFLGDHTSMQEAESNVLCGFEGSLWQH 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1562 259 MobiDBLite consensus disorder prediction 9 45 - -
Dere01g1562 259 ProSiteProfiles AP2/ERF domain profile. 63 120 IPR001471 GO:0003700|GO:0006355
Dere01g1562 259 SUPERFAMILY DNA-binding domain 63 121 IPR016177 GO:0003677
Dere01g1562 259 SMART rav1_2 63 126 IPR001471 GO:0003700|GO:0006355
Dere01g1562 259 FunFam Ethylene-responsive transcription factor 2 62 121 - -
Dere01g1562 259 Gene3D AP2/ERF domain 63 121 IPR036955 GO:0003700|GO:0006355
Dere01g1562 259 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Dere01g1562 259 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Dere01g1562 259 CDD AP2 64 122 IPR001471 GO:0003700|GO:0006355
Dere01g1562 259 Pfam AP2 domain 62 112 IPR001471 GO:0003700|GO:0006355
Dere01g1562 259 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 38 195 - -
Dere01g1562 259 MobiDBLite consensus disorder prediction 46 62 - -
Dere01g1562 259 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1562 Dere-ChrDere01 28922969 28923748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1562 35 231 AP2-EREBP Transcription Factor Family AT5G11590 56.604 3.14e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere01g1562 AP2 4.1e-14 CL0081