Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1557 ATGGGAGATTATCCTGATTTGATGCGACAGCTAGAGGAAGTGGAAGGGGAAGAGGAGCATCAATGGATAATGCAGCAAATTATTCAAATTCTGAGAGACCAAAACTTCCCTTCAGATGATATCACGCAACATATCTGGGTGTCTTGGAAGCGACTGAGCTGCTGCGACATGAGGAGGCTATTGATGAAGAGAAGACATGTGGAATCCAGGATCTTGCCCCGCTTGTACCAAAACGAAGACGTCAATGCTGGAGTTCCAGTCATCGTGTATGGCGTAGATGGGAGGCCCCACAACATGACCTTCAAATCTTGGAGGCCTTGTTCCTACGTCCTAACTGGAGGCTGGCGTGATTTCTGGGACGAATATGCCTTCCATATTAAAGATTACATAACCCTATGGCTCTGTCGCCAACGCCACACTCGCCGTCGCCGTCAGCAACACCGACGCCTACGCCTATGCCTACGCCCACGTCCTATACCCAACTATCTCACACTTGTTATCCTTCCTTGCCGCCGTTGA 519 0.4971 MGDYPDLMRQLEEVEGEEEHQWIMQQIIQILRDQNFPSDDITQHIWVSWKRLSCCDMRRLLMKRRHVESRILPRLYQNEDVNAGVPVIVYGVDGRPHNMTFKSWRPCSYVLTGGWRDFWDEYAFHIKDYITLWLCRQRHTRRRRQQHRRLRLCLRPRPIPNYLTLVILPCRR 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1557 172 Gene3D - 48 152 IPR015300 -
Dere01g1557 172 PANTHER OS05G0237600 PROTEIN 40 154 - -
Dere01g1557 172 SUPERFAMILY DNA-binding pseudobarrel domain 46 140 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1557 Dere-ChrDere01 28872365 28872883 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1557 50 142 B3 DNA Binding Superfamily AT4G03170 33.333 1.12e-13 65.1