Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1556 ATGGATGCATCAAAACCCTCTCAATCTCAACGTTTGGAAACAACCGAAAACCAGAAATCTCAAACCACTCATTCTCTTGAGACAAAAGAAACAAAAAGTGATTATTGGGGTTTGATGCTAGCATTCGATCTAGCAAAAAAGGAACGGGAACGGCAAGAGATAATGCAGCATATTGTTCGAACACTGGGAAGCTCCGACTTGTTTGACGATGAAGCAGTGCGACTGCATACCTTGGTGTCTTTGAAGGAATTGAGAAACCAATCCGACGTGAGACGTTCGCTGTCCCTGAACAATGCAGACGTGGAATCCAAAATAATTCCCCGCTTAAAGAACCACGAAAAGATCGATAAGGGAATTCCAGTCACCGTGTATGGCAAAGATGGGAGGCCCTACGACATGGAAATCAAAAGATGGGGTTTAAGATATGTCCTGCGTGGACAATGGCATCATTTCTGCAAAAAGCAAGCCCTCCATGTTGGAGATACCATCTTATTATGGCTCTTCCATGAACGCCATCCTACAACCAGACATCTCAGATTTGTTGTCGCTCCCCGAACCCATGCCCTCCAAAATGGAGATACCGTCTCGGACTTGTTTGCAGAGAATGGATGGGAAGCCTTACGACATGAAAATTAA 636 0.4465 MDASKPSQSQRLETTENQKSQTTHSLETKETKSDYWGLMLAFDLAKKERERQEIMQHIVRTLGSSDLFDDEAVRLHTLVSLKELRNQSDVRRSLSLNNADVESKIIPRLKNHEKIDKGIPVTVYGKDGRPYDMEIKRWGLRYVLRGQWHHFCKKQALHVGDTILLWLFHERHPTTRHLRFVVAPRTHALQNGDTVSDLFAENGWEALRHEN 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1556 211 Pfam B3 DNA binding domain 110 170 IPR003340 GO:0003677
Dere01g1556 211 Gene3D - 81 196 IPR015300 -
Dere01g1556 211 MobiDBLite consensus disorder prediction 1 28 - -
Dere01g1556 211 MobiDBLite consensus disorder prediction 1 22 - -
Dere01g1556 211 SUPERFAMILY DNA-binding pseudobarrel domain 106 174 IPR015300 -
Dere01g1556 211 CDD B3_DNA 96 182 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1556 Dere-ChrDere01 28867991 28868626 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1556 62 182 B3 DNA Binding Superfamily AT4G03170 35.938 5.09e-13 64.3