Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1554 ATGCTAGCACTGGAACTAGCAGAACAGGAAGAGGAACGGCAAGAGATAATGCAGCATATTGTTCGAACACTGGGAAGCTCCGACTTGTTTGACGATGAAGCAGAGCGACTGCATACCTTGGTGTCTTTGAAGGAATTGGAATACCAATCCGACGTGAGACGTTCGCTGTCCCTGAACAATGCAGACGTGGAATCCAAAATATTTCCCCGCTTAAAGAACCACGAAAAGATCGATAAGGGAATTCCAGTCACCGTGTATGGCAAAGATGGGAGGCCCTACGACATGGAAATCAAAATATGGTGTTTAAGATATGTCCTGTGTGGGAAATGGCGTCATTTCTGCAAAAAGCAAGCCCTCCATGTTGGAGATACCATCTTATTATGGCTCTTCCATGAACGCCATCCTACAACCAGACATCTTAGATTTGTTGTCGCTCCCCGAACCCATGCCCTCCAAAATGGAGATACCGTCTCAGACTTGTTTGCAGAGAATGGATGGGAAGCCTTACGACATGAAAATCAAAGTTTGAAGTCCTAG 537 0.4581 MLALELAEQEEERQEIMQHIVRTLGSSDLFDDEAERLHTLVSLKELEYQSDVRRSLSLNNADVESKIFPRLKNHEKIDKGIPVTVYGKDGRPYDMEIKIWCLRYVLCGKWRHFCKKQALHVGDTILLWLFHERHPTTRHLRFVVAPRTHALQNGDTVSDLFAENGWEALRHENQSLKS 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1554 178 Gene3D - 43 156 IPR015300 -
Dere01g1554 178 SUPERFAMILY DNA-binding pseudobarrel domain 66 136 IPR015300 -
Dere01g1554 178 CDD B3_DNA 58 130 IPR003340 GO:0003677
Dere01g1554 178 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 48 144 IPR005508 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1554 Dere-ChrDere01 28852958 28853494 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1554 24 144 B3 DNA Binding Superfamily AT4G03170 35.938 3.48e-13 63.9