LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g1553	ATGGGAGATTATTCTGCTTTGATGCGACGACTAGAAGAAGCAGAGATGAAAGAGGAAGAAGAAGAGATAATGCAGAAAATTATTCCAATACTGGGATGCTCCCAGTACGCTCCAAACAAAGTGCCACAACACATCATGGTTTATTCGAAGCGATTGTCCCCAAACGATAAGAGGAGGCTAAAGATAGAAGGAAAAGACGTGGAGTTCAAAATCTTGCCCTTCTTAAACCTGAACGAAGACATCAAGGAAGGAATTCCGGTCACCGTGTATGGCAGAGATGGAAGGCCCTACGACATGACCTTACGACGCAAAAATCGCTCCTTAGGCTCCTATGTGCTACATGGCCACTGGTCTAGTTTCTTCCTCGAACAAGCCTTCGGAGTTGGAGATTACATCACAGTATGGCTCTTTCGCGAACGCCATCCTTTAACCAGACATCTCAGACTTACAGATTCCGGGGTGAATAAGGTCACTCCTCCCGCGTTTGGATCCTCTCCCTTGCAGCTCTGCTTTTGCTTTTCTTCCATTCAATTTGTTTCCTGCTTATGTTTTTCTGCTTGTTGCTTGAATCCAAACGATTCTGATGTTTGTTTTTGTTATCCTATTACTGGAATTTATGCTGCAAGAGCTGATTGCTTATCTGTTTTGTTCTTTTCAAAGCTAGTAGCTAGATCTGGATACTTTGCTCGCTTTATGAGAAAAGCGAGAAGATATTACAATATGGAGGATGAGAATGGGCTTGAGCTCAGCTTGGGACTATCTTGTGGCGGCTCATCTGTGAAACCGAACAGTAAGAATGGTATCTCCTTGGATACTAGGGCAGAAGAAGTTGATAGAGGTGGCAAGATGGATGATGATTTCAAGAACTTTCTTAATGCTGAAAATCATAGAACTGAACCCTCAAAACCTGAGGAGAACTTCTTTTATCCCCTTTCAAAGGCCAAAGAAGAGGATGCTCCTGCAAATTTAAATGGGGGAGGACTTTGGTTTGCAGACAATAATAAACCTGGTGAGATTGAGGAAGATAAACGATTAGAGACAGGAAATAAACGAAAGATGTTCTTTGATGAGCGAAATAATCAAAAGAAGCATGAAATTGAAGTTCATCATGCTGATCTACATGAAAGGGCAAGAACACCACGCATCTCTATATCTGAAGATGGCTCAAAGGCTGGAAATGGATATGTTGCAGATTCTGAAGCCGAGAACTCAGCCTCTAGGCCTTTTTCACTTAAAGATGATGGTTTCAAACAATTCATGAGAGTTGGTGGTTCTTCTGTTGCTCCAAAAGAAGTTTGTACAGTCTCTGACTCAAGTGCCACTGACTTGAGTGGGAAAAAGAGGTTTATTGATTTATCAGAAAAAGATTTCAAGCTTGCGAACTTGAATTATGGTGCTTCTTTCCCTGTCCAACAAGCAAATTTAATAAATATGTCTTACCCTTCAACTGAAAAAGAATCTAACTCTGTTGGAGCTCCAAGCCCTCAGATTCCTGCAATAGCGCATGCAATGCCATCGGCAACTAGTGAATGCTCAGGAGCCCAACGTGCGAGTAATGGGAACTTGCCAGTGATGTTTCAACTTCCAATATCAGATAAAGATAACTTACGAGGTTCAGTTTTTCATCCTCAACAGTTACACCCTTCCTTTGCTGGCGAAGATCCACCAAACTCAGCTAATTGTGAGATAGATGGAACACAAACCTCGGGAAAAAATGTATCAGACGAACCTAAAGAAGGTTTCTCCATTGATGTTTCAGCTATTAAGCCAGGTCTTGCTGCAGATGTAAAATTTGGTGGATTTGGCTCCTACCCAAACCTACCCTGGGTTTCTGCCACAGGTTCAAATGGCAGGACAATGTCTGGTGTTACTTACGGATACATCAATAACCATATCAGAATTGTATGTGCTTGCCATGGTTCTCACATGTCCCTCAAGGACTTCGTTCGGCATGCAAATGAAGACACGGTTAGTCCAGACGGTGGTGGGGCAGTTTTGGGACAGTATCAAATGGCAATCCATCTGCCTCCTCTCACAGCTAGCTAA	2046	0.4262	MGDYSALMRRLEEAEMKEEEEEIMQKIIPILGCSQYAPNKVPQHIMVYSKRLSPNDKRRLKIEGKDVEFKILPFLNLNEDIKEGIPVTVYGRDGRPYDMTLRRKNRSLGSYVLHGHWSSFFLEQAFGVGDYITVWLFRERHPLTRHLRLTDSGVNKVTPPAFGSSPLQLCFCFSSIQFVSCLCFSACCLNPNDSDVCFCYPITGIYAARADCLSVLFFSKLVARSGYFARFMRKARRYYNMEDENGLELSLGLSCGGSSVKPNSKNGISLDTRAEEVDRGGKMDDDFKNFLNAENHRTEPSKPEENFFYPLSKAKEEDAPANLNGGGLWFADNNKPGEIEEDKRLETGNKRKMFFDERNNQKKHEIEVHHADLHERARTPRISISEDGSKAGNGYVADSEAENSASRPFSLKDDGFKQFMRVGGSSVAPKEVCTVSDSSATDLSGKKRFIDLSEKDFKLANLNYGASFPVQQANLINMSYPSTEKESNSVGAPSPQIPAIAHAMPSATSECSGAQRASNGNLPVMFQLPISDKDNLRGSVFHPQQLHPSFAGEDPPNSANCEIDGTQTSGKNVSDEPKEGFSIDVSAIKPGLAADVKFGGFGSYPNLPWVSATGSNGRTMSGVTYGYINNHIRIVCACHGSHMSLKDFVRHANEDTVSPDGGGAVLGQYQMAIHLPPLTAS	681

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g1553	681	SUPERFAMILY	DNA-binding pseudobarrel domain	45	148	IPR015300	-
	Dere01g1553	681	Gene3D	-	40	154	IPR015300	-
	Dere01g1553	681	PANTHER	AFP HOMOLOG 2	238	658	IPR031307	GO:0007165
	Dere01g1553	681	MobiDBLite	consensus disorder prediction	560	575	-	-
	Dere01g1553	681	CDD	B3_DNA	48	139	IPR003340	GO:0003677
	Dere01g1553	681	MobiDBLite	consensus disorder prediction	548	577	-	-
	Dere01g1553	681	Coils	Coil	4	24	-	-
	Dere01g1553	681	MobiDBLite	consensus disorder prediction	384	410	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g1553	Dere-ChrDere01	28840593	28845582	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g1553	56	147	B3 DNA Binding Superfamily	AT4G03170	35.484	7.83e-08	52.4