Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1552 ATGAACCTACTGGGTATTCGTCTTTCTCTTCTCTCTCTGATATTCTTCCGTGTGAGGGCACAAACACCACAGGATTCACCTTCGTTCGATGCCATCTCCAATTTCCAACCCAGCTTAGCAGTTGTCATAGGAATCCTATGTCTTATGTTTTCACTGACATTCATTCTTCTCATGTATGCAAAATTCTGTCAACGCAGAGCTTCAGCTCACGTTGACCCGGAAAACCAACCTGCACTTCTGAGATCGAGGTCTAGATTCTCAGGAATCGACAAGACTGCCATAGAATCACTCCCCTTCTTTAGATTCTCTTCCCTCAGAGGCTCAAAAGAAGGTCTGGAATGTGCAGTGTGCTTGTCAAAGTTTGAAGATATTGAAATCCTCAGGCTTCTTCCCAAATGCAAGCATGCCTTTCATATCGATTGTATTGATCATTGGCTTGAAAGGCACTCAAGCTGTCCTCTTTGTAGGCACAAGGTCAGTTCTGAGGACCCAACGATGTTCACATATTCAAACAGTTTGAGGCTTCTTGCTAGCCAGTCCGATATGAGTGAGGAACCCAATATAGAGATCTTTGTTCAAAGGGAAGAAGAACGACATGGGTCATCAAGATTCAGTATTGGAAGCAGCTTCAGAAAATCTGAAAAGGGAATTAAGGAAGAAGAATTGCCAATCCAAGAAGAAGCAGTGGATGGTGATGGAAAGTTCTATCATAAGCATAACCACAAGATTACTATATCTGATGTGGTGTTCAAGCACCGATGGAGCGACGTGAGCTCTTCAGACCTCATGTTTTTGAATTCAGAGATGATGAGTTCCATGCAAAGTAAAAGATTCAATCTTTTGGGATCAAATGGTGACCAGATTCCAGCTTCAACATCAGTAGAAAATGGGCATATGATCAACATAAAGGAGGAGATGGGGAGGAAGATTTCCTTTGAGAATAAGGTCGGTGCATTAAATAATATAAACTCAGTTTTAGACGCATCAGATTGTGCAGGAACTTCTTCTTCTAGTCATACAGCGAAATATGTGAATCCGGGTGAGAAAAGATCGATGTCAGAAATCACTGCTGTGTCTAGATTTGGAGATTTGGGCATGAAAAACAGGGTCTTTAAGGATTCATCTGTGATTGAAAACGATGTTAAAGAGGAAAGAATGAGACAGTTATGGATGCCAATCGCCAGAAGAACAGTTCAATGGTTTGTGAATAGAGAAAGAAGATCACAGACATTAAATGTATAG 1242 0.413 MNLLGIRLSLLSLIFFRVRAQTPQDSPSFDAISNFQPSLAVVIGILCLMFSLTFILLMYAKFCQRRASAHVDPENQPALLRSRSRFSGIDKTAIESLPFFRFSSLRGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHIDCIDHWLERHSSCPLCRHKVSSEDPTMFTYSNSLRLLASQSDMSEEPNIEIFVQREEERHGSSRFSIGSSFRKSEKGIKEEELPIQEEAVDGDGKFYHKHNHKITISDVVFKHRWSDVSSSDLMFLNSEMMSSMQSKRFNLLGSNGDQIPASTSVENGHMINIKEEMGRKISFENKVGALNNINSVLDASDCAGTSSSSHTAKYVNPGEKRSMSEITAVSRFGDLGMKNRVFKDSSVIENDVKEERMRQLWMPIARRTVQWFVNRERRSQTLNV 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1552 413 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Dere01g1552 413 SMART ring_2 114 155 IPR001841 -
Dere01g1552 413 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 26 406 - -
Dere01g1552 413 CDD RING-H2_EL5-like 113 156 - -
Dere01g1552 413 FunFam RING-H2 finger protein ATL43 89 163 - -
Dere01g1552 413 SUPERFAMILY RING/U-box 94 162 - -
Dere01g1552 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 165 IPR013083 -
Dere01g1552 413 Pfam Ring finger domain 113 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1552 Dere-ChrDere01 28836561 28837802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1552 10 409 C3H Transcription Factor Family AT4G28890 47.005 6.71e-112 333