Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1540 ATGTCTGTGCTGTTAGAGCAGGACTATGTAGGCTTGACAGAGCATCCTTCAATGGAAAAAGGCTCAGACAAGTTTTCCCAGAGAAGCACTGGTGGCTTGAACCTGAAGGCCACTGAGCTGCGACTTGGTTTACCTGGGTCCGAGTCACCAGAGAGAGATGGTGGTGGTGGTGGCGGAGGGGCCAAGAGTGCGGTGGTGTGTGGGGCCAAGAGGGGTTTCTCAGACACCATTAACGGTGGTTCTGGGAAGTGGGCTATGTCAGGGAATGGTAAATCTGAGGTGGGTTTGGGAAAAGATGGTGGCTTGTTCTCTCCCAGGGGTGGCACTAACCCACAAGCATGTTTGGGTGCCTCCCTTGTGGAAGATAGCATCCCACACTCACCGAAGCCATTGTTGCACGAGAAGAAGCCTCAGATTTCTGCACTCCCTCCAAAGGAACAAGTTGTGGGATGGCCTCCAATCAGATCTTTCAGGAAGAACTCGATGACTACTAATCCTCAGAAGAACAGTGATGATGCAGAAGCCAAGTCTGGATGCCTTTATGTTAAAGTAAGCATGGATGGTGCCCCCTACTTGAGGAAAGTGGATCTCAAACACTTTGGGAGTTACCAGCAACTTTCTTCGGCACTTGAAAAGATGTTCAGTTGTTTTACAATCAGTCAATGTGGATCTCATGGGGTTTCAAGTCATGATAATTTGAGTGAAAGCAGGCTGATAGATCTCTTGCATGGTTCTGAATATGTGCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTACCCTGGGAGATGTTCACTGACTCATGCAAGCGATTAAGGATAATGAAGAGTTCTGAAGCAATTGGACTAGCACCAAGAGCAATGGAAAAGTGCAAAAGCCGCAATTAA 900 0.48 MSVLLEQDYVGLTEHPSMEKGSDKFSQRSTGGLNLKATELRLGLPGSESPERDGGGGGGGAKSAVVCGAKRGFSDTINGGSGKWAMSGNGKSEVGLGKDGGLFSPRGGTNPQACLGASLVEDSIPHSPKPLLHEKKPQISALPPKEQVVGWPPIRSFRKNSMTTNPQKNSDDAEAKSGCLYVKVSMDGAPYLRKVDLKHFGSYQQLSSALEKMFSCFTISQCGSHGVSSHDNLSESRLIDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKCKSRN 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1540 299 Pfam AUX/IAA family 38 290 IPR033389 -
Dere01g1540 299 ProSiteProfiles PB1 domain profile. 179 281 IPR000270 GO:0005515
Dere01g1540 299 FunFam Auxin-responsive protein 174 291 - -
Dere01g1540 299 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 33 286 IPR003311 GO:0005634|GO:0006355
Dere01g1540 299 MobiDBLite consensus disorder prediction 14 62 - -
Dere01g1540 299 Gene3D - 173 293 - -
Dere01g1540 299 SUPERFAMILY CAD & PB1 domains 176 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1540 Dere-ChrDere01 28705654 28708234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1540 181 297 B3 DNA Binding Superfamily AT1G19850 29.915 9.43e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere01g1540 AUX_IAA 4.9e-84 CL0072