Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1538 ATGGTCTTACTTAATCAAGAGCAAGAGGACCTCTCAAAGTTTCTACAAAGACCCCTGTTTGGGAGGAAGCATCAAGAAAGAAAGAGAAAGGAGAATTTCTTTTTCTTTGTAGAGCGAGAAGCATCAGAACTAGAAAGAAAGAAAGGCATGAATAGAGGTCATATCCTTCAGAGCTCACCGGTGCAGCAAATGATGGCCAACCCTAACTGGTGGAACATCAATATTAATACCATGCGCCCTCAACAACCGTCTCCTTTCTTGTCCACTCCTTCCAACTTTCTCCCCAATCAACAGCTTCCTTCTTGGCAACACGACCACAATCAACAACTTCCAGACTCATGGACCCAACTTCTCATGGGTGGATCGGTGGGTGAAGATGATAGAGGACTTATGGGTCAGTTTCAGGCTTCGAATGCTGCTCTCATGGATATTAAGCAAGAAAGTTCAGTGAACAGCTATGGCTACGGACATGGAAATAGTGAAGAATTTCAGGCAGTGAAACCAGGTTGGCCTCAAATAGCAGTGCCAACTTCTTCCCCAAAGTCCTGCGTCACAAGTTTCAGCAGCAACATGTTGGATTTCTCTAACAATCACACTGATGCGAAGCAGCCCCTACCAGATCCATCTTCTGAGTGCAACAGCAGTGCAGCAGGTGGGGCACTGAAGAAAGCTAGGGTTCAGCCCTCTACAACTCAGTCTACCTTCAAGGTTAGGAAGGAGAAGTTGGGTGACAGAATCACAGCCCTTCATCAACTAGTTTCCCCATTTGGGAAGACTGACACAGCCTCTGTCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATCGAGGCCCTTAGCCTACCATACCTGGGCAATGGATCACCAAACATGAGGCAGCAACAATCTGTTCAAGGAGAGAACAATTGTATATTCCCCGAAGACCCCGGTCAGCTGGTGAACGAAAACTGCTTGAAGAGGAAAGCAGCTGGTAATAAGCTGGAGGAAGAAGGAAAGAAGGACCTGAGAAGTAGAGGGTTGTGTCTGGTTCCAGTGTCATGCACAATGCAAGTTGGGAGTGAGAATGGAGCAGACTATTGGGCTCCTGCTCTAGGAGGAGGCTTTCGGTAG 1119 0.4683 MVLLNQEQEDLSKFLQRPLFGRKHQERKRKENFFFFVEREASELERKKGMNRGHILQSSPVQQMMANPNWWNININTMRPQQPSPFLSTPSNFLPNQQLPSWQHDHNQQLPDSWTQLLMGGSVGEDDRGLMGQFQASNAALMDIKQESSVNSYGYGHGNSEEFQAVKPGWPQIAVPTSSPKSCVTSFSSNMLDFSNNHTDAKQPLPDPSSECNSSAAGGALKKARVQPSTTQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGNGSPNMRQQQSVQGENNCIFPEDPGQLVNENCLKRKAAGNKLEEEGKKDLRSRGLCLVPVSCTMQVGSENGADYWAPALGGGFR 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1538 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 236 287 IPR036638 GO:0046983
Dere01g1538 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 226 275 IPR011598 GO:0046983
Dere01g1538 372 MobiDBLite consensus disorder prediction 197 221 - -
Dere01g1538 372 Gene3D - 232 287 IPR036638 GO:0046983
Dere01g1538 372 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 94 354 - -
Dere01g1538 372 MobiDBLite consensus disorder prediction 197 216 - -
Dere01g1538 372 FunFam transcription factor bHLH68 isoform X1 233 286 - -
Dere01g1538 372 CDD bHLH_AtbHLH_like 234 283 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1538 Dere-ChrDere01 28674347 28678360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1538 50 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 40.331 1.00e-56 187