Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1537 ATGACAACCACCACCACCACCACTTCATCTCAGATTCTCCGACACACCACCGCCTTCATCTCTGACGTCCTTTCGCAATCCGAACTCCGTCGCCGTGTCATTTCCATACTCCTTCGCGAGTCTTCAATCTCCAACCAAATCACACTCAAACACCTCAATCTCGCCGCCGACACTCTAGAAAATGCCATCTCCGTCTCCATCCCCACAATCCGATCCTCCTCTCTCAACCTCGCCGAGAAGCTTCTTCTCCCTCTCCCTCAAAACGCCATTTCGTCTTTCCTTCTCTCTCTCATTTACACCCTCCATAAACGGCAAGTCGATGCCGCCTTAAGTCTCCTCCAAATCTTCCATCTAAATTCTTCCTTGGCTCGATCAGAAATCGCACCGATTCTCTACGAGCAGCTGTTTTCTCTACATCTCCTCCCTGTTTTCCGATCCTTCGATGAACAGAGAGCAAAAATACTGCCATCTACATCGGCAAATTCAGCACGCTATACAAGCGATTATTCAACTTCGGACGAATCTGTAGTCTTACCCTTCACGAAATTGTTGTCGCAGATGAGCGATGATCAGGCTTCGAAACTGAGTGAATTGGAGAGACACTACGAAGAGGCTCTTGATGACAATTGCAGGATTATTGCCGAGTACTTCAAAGAAGTTTTGGTGAATAACAATGGGGACTCATCAGTTATTCCGCCATTGTTGGTTCTGAAGAGCAGTAGAGAAGATGATGAAATGGAGAATAGTCAGGAAAAGATAGTGGAAACAAATATGCCTTCGTTTGAGAACGGACGGATGTGGTTTGACTATATTGAGAAGAAACAAAGGCTCTTTCTGGCTGTATTGGGAATGAAATTCCCTATATGGACCGAAAGGGAAACATCTATTGAACTTTCAAGCAGCAGTTTCAGCAGCAAGTTCTTGAAAGCACCGTTTTATCCTCAAAGAGTCTCTCCCAAAGTCCTCAAACCCCAAAAATCTTGTGACAAACTGTCCATGCCAACTTGTTCAAACTTAAGCGCCGACTCTGACTCTTCGTTAGATGAAATTTTGCCTTGTTATTCTTCAGAATCTAAGGCCGAAAGTAAGGAAAAAGACAAAAAGAAGATAATGTCGGAGCCTCGACGAAGCCAAACCCAAATATCAATGCAAGTTAGTTTGGCAGAATCTCGAGGTTCCCCAGATTATCCCATGGCAGATTATGATAACCAGCCGCATGGAAACGGAAAATGTACGCCTCCTAAGGACTTTGTGTGTCCAATAACTAGCAATCTTTTTGATGATCCTGTAACTCTTGAGACAGGTCAGACATATGAACGTAAAGCTATCGAAGAATGGTTCAATAGGGGGAACTCAACTTGTCCAATTACCCGCCAGGAGCTGCAAAGTACCCAGCTACCTAAAACAAATTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGAACAGAATCCCAATTCAATTCCATCGCCATCTGAGAGTCTACATGCTGAAACTGAGGTAGCAGTTAAGTCAGTAAAGCCTTCAACTTCTCCTAATAGTGTTATAACACAAGGCAACGTTGATGGAATGATTAGTGAGTTACGACATGCAATTAACAACCTGTATATATCAGAGATTCTAGAGGAATCCGAAATGGCTGTGCTTCAAATTGAGCAGTTATGGAAAGAAGTAAACCTGGGAGTGGATATCCAGAGCATGCTATCAAAACCTCCAATCATTAATGGGTTTGTGGAGATTCTGTTCAATTCTGTTGATTCCCAGGTGCTTCAAGCAACGGTTTTTCTTCTGGCAGAGATGGGTTCTAGAGACAATGCTGTTATTCAGACGCTTACGCGAGTGGACTCGGATGTAGAATGTATTATGGCGCTTTTCAAGAAAGGGTTGACAGAGGCTGTTGTATTGATATATCTCCTAAAACCTTCCGCCACGATTCTTGCAGAAATGGCCATATTGGAGCCTCTCATGTCTGTTTTCGGTAAGAAAGAGGAGGACTTGCGTAAGATGTGTATAAAGCCCAAGTCAGCTGCGGTGCTTTTACTGGCACAGATTCTTGGAAGCAGTGAGGAGAGAATTGCATCTTCAGTAACCAAGACTTTGGTAACTGAAAAAGCAATTGGAAGTATTGTTGGCAGTTTCGGAGCTGAATGGGCAGAGGAGAGGATTGCTGCAGTGGAGATCTTATTAAGATGCATGCAGGAGGATGGAGCTTGTAGGAACATCATTGCAGAAAAAGCTGAGCTGTCTCCCGTTTTGGAAAGCTTCATTGGGGCAAGTGACGCGGAACGTTATAAGATAGTTCAATTTTTGTTCGAGTTAGTTAAATTAAATAGGAGGACATTCAATGAACAAATTCTCCATATTATAAAAGAAGATGGTTCATTTAGTACAATGCACACTCTCCTCATTTATCTACAGACAGCCCTTCAAGATCAATGTCCTGTCGTGGCCGGCCTCCTACTCGAACTTGATCTTCTGGTAGAGCCAAGAAAGATGAGTATATACCGTGAAGAGGCTATAGATACTCTTATTTCATGCCTCAGAAACACTGATTTCCCAGCTGCCCAAGTTGTAGCTGCTGAGACGATTGTGTCGTTACAAGGGAGATTCAACTTTGTCGGAAAGCCTCTCACTAGAGAAGTCCTTCTTAAACGTGCTCGCTTTGACAGAAGTTATAAAAGTTTTAATCAGATGGATCGTATGAGCAGTTTCTCTGGAGAACTTGAAATGAATCCTGAAGAAGAGAAGGCTGCTGATGATTGGGAAAGAAAAATTGCGTCTGTTTTAGTTGGTCATGAGTTTGGTCTACTTTTTGAGGCTTTAGCAGATGGCTTGAAGAGCCGAAGTACACAACTAAGTTCAGCATGCTTTGTATCAGCTACATGGCTCACATACATGCTTTCTATTCTACCAGATACAGGAATACAGGGAGCAGCCTCTGTCTGCTTGCTCAAGCGCTTTGTATCTATATTAAAATCTGCTAAGGACAAAGAAGACAGAATCCTTTCTATGCTTGCTTTAAATAGCTTTCTTTATCACCCTGATGGATTGCATGACCTTACTTCCTACACTAAGGATGTCTTAAAAGGTCTGCGAGAGCTTAAGAGATCCTCCCCACTGGCATCTGAAATGCTTAAAGTTCTGGTTGAAGAGAATGAATCTAAAGCAGACATCTGGAACCATAAAGAGTTAATTCAGGTAGATTGCAGTGAGAATGGAGAAGTGTTATCTGTCATTTGTCAAAAGGATAAAATATTTTCAGGCCATTCAGATGGAACTATCAAGGTCTGGACGGTCATGGGTAGCATATTCCATCTGATACAAGAAACGCAAGAACATTTGAAGGCTGTTTCAAGCTTGGCAATTTCAGATTCTGGTGATAGACTATACAGTGGTTCACTTGATCGAACTGTGAAGGTCTGGTCTGTAGGAAAGGCAGCAATACACTGTATACAGGTGCATGATATGAAAGATCAGATTCATAATTTAGCTGTAACCAATAGCATATTCTGCTACATTCCTCAGGGAACTGGTGTCAAGGTTCAATCATTGAATGGTGAATCGAGGCTATTAAACTCTTACAAATACGTGAGGTGCTTGGCTCTTGTTCGTGAGAGACTATACTGCGGATGCCACGACAATAGTATCCAGGAGATAGATGTGGAAAATGGAACAGTCAATACCATTCAAAGTGGTTCCAAAAAATTGCTAGGTAAAGCAAATCCCATTTATGCACTGCAAATTCGTGGTGAACTTATATATGCAGCCGGCTCTTCCTTGGATGGAACTGCTATAAAGATATGGAACACTTCGAATTACAGTATGATTGGATCACTGGTAACTTCATCAGAAGTGAGGGCAATGGCAATGAGCTCAGAATTAATTTATTTGGGGTGCAAGGGAGGAGCTGTAGAAGTTTGGGATAGGAAGAAACACAATAGAATTGATACATTACAAATGGGTACCAATGGTAAGATTGCTTGCATGGCTGTTGATGGCAATGAAGAAATCTTGGTGATTGGAACCTCTGATGGTCGAATTCAGGTACGCATCTTCCTTGACTATAGTCCTCTTTTGTTTAACTGTATTTATTACATTTCTTTTCTATTTTGGATTCAAAGCATGGGGAGTAAACTAAAGGAGGGTGCAATACATTTTGCTACAGGAAATGAAAGATTAACTTATTTAACTGATATTAAATTCGTTGAACCTCTGAAATGCTCATTTGAGATTAGTTTGGTAAGCTGTATATTGCTCACAGGCTTGAGCACGGGGGATCTTTTCAATTGCAAAATGCTAGACATTACTGAATCCCTTGGATGTAGAATCATTGTTTACTTTCAAGACACATTGACCCTTTTCAATTGA 4368 0.4185 MTTTTTTTSSQILRHTTAFISDVLSQSELRRRVISILLRESSISNQITLKHLNLAADTLENAISVSIPTIRSSSLNLAEKLLLPLPQNAISSFLLSLIYTLHKRQVDAALSLLQIFHLNSSLARSEIAPILYEQLFSLHLLPVFRSFDEQRAKILPSTSANSARYTSDYSTSDESVVLPFTKLLSQMSDDQASKLSELERHYEEALDDNCRIIAEYFKEVLVNNNGDSSVIPPLLVLKSSREDDEMENSQEKIVETNMPSFENGRMWFDYIEKKQRLFLAVLGMKFPIWTERETSIELSSSSFSSKFLKAPFYPQRVSPKVLKPQKSCDKLSMPTCSNLSADSDSSLDEILPCYSSESKAESKEKDKKKIMSEPRRSQTQISMQVSLAESRGSPDYPMADYDNQPHGNGKCTPPKDFVCPITSNLFDDPVTLETGQTYERKAIEEWFNRGNSTCPITRQELQSTQLPKTNYVLKRLIASWKEQNPNSIPSPSESLHAETEVAVKSVKPSTSPNSVITQGNVDGMISELRHAINNLYISEILEESEMAVLQIEQLWKEVNLGVDIQSMLSKPPIINGFVEILFNSVDSQVLQATVFLLAEMGSRDNAVIQTLTRVDSDVECIMALFKKGLTEAVVLIYLLKPSATILAEMAILEPLMSVFGKKEEDLRKMCIKPKSAAVLLLAQILGSSEERIASSVTKTLVTEKAIGSIVGSFGAEWAEERIAAVEILLRCMQEDGACRNIIAEKAELSPVLESFIGASDAERYKIVQFLFELVKLNRRTFNEQILHIIKEDGSFSTMHTLLIYLQTALQDQCPVVAGLLLELDLLVEPRKMSIYREEAIDTLISCLRNTDFPAAQVVAAETIVSLQGRFNFVGKPLTREVLLKRARFDRSYKSFNQMDRMSSFSGELEMNPEEEKAADDWERKIASVLVGHEFGLLFEALADGLKSRSTQLSSACFVSATWLTYMLSILPDTGIQGAASVCLLKRFVSILKSAKDKEDRILSMLALNSFLYHPDGLHDLTSYTKDVLKGLRELKRSSPLASEMLKVLVEENESKADIWNHKELIQVDCSENGEVLSVICQKDKIFSGHSDGTIKVWTVMGSIFHLIQETQEHLKAVSSLAISDSGDRLYSGSLDRTVKVWSVGKAAIHCIQVHDMKDQIHNLAVTNSIFCYIPQGTGVKVQSLNGESRLLNSYKYVRCLALVRERLYCGCHDNSIQEIDVENGTVNTIQSGSKKLLGKANPIYALQIRGELIYAAGSSLDGTAIKIWNTSNYSMIGSLVTSSEVRAMAMSSELIYLGCKGGAVEVWDRKKHNRIDTLQMGTNGKIACMAVDGNEEILVIGTSDGRIQVRIFLDYSPLLFNCIYYISFLFWIQSMGSKLKEGAIHFATGNERLTYLTDIKFVEPLKCSFEISLVSCILLTGLSTGDLFNCKMLDITESLGCRIIVYFQDTLTLFN 1455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1537 1455 SUPERFAMILY RING/U-box 410 489 - -
Dere01g1537 1455 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 1349 - -
Dere01g1537 1455 MobiDBLite consensus disorder prediction 357 409 - -
Dere01g1537 1455 MobiDBLite consensus disorder prediction 375 389 - -
Dere01g1537 1455 ProSiteProfiles U-box domain profile. 412 487 IPR003613 GO:0004842|GO:0016567
Dere01g1537 1455 Gene3D - 1168 1354 IPR015943 GO:0005515
Dere01g1537 1455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 495 IPR013083 -
Dere01g1537 1455 SMART Ubox_2 416 480 IPR003613 GO:0004842|GO:0016567
Dere01g1537 1455 SUPERFAMILY WD40 repeat-like 1074 1349 IPR036322 GO:0005515
Dere01g1537 1455 ProSiteProfiles Trp-Asp (WD) repeats profile. 1110 1143 IPR001680 GO:0005515
Dere01g1537 1455 Gene3D - 1006 1167 IPR015943 GO:0005515
Dere01g1537 1455 CDD RING-Ubox_PUB 414 466 IPR045210 -
Dere01g1537 1455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1110 1143 - -
Dere01g1537 1455 SUPERFAMILY ARM repeat 570 1033 IPR016024 -
Dere01g1537 1455 Pfam U-box domain 414 484 IPR003613 GO:0004842|GO:0016567
Dere01g1537 1455 SMART WD40_4 1311 1353 IPR001680 GO:0005515
Dere01g1537 1455 SMART WD40_4 1233 1269 IPR001680 GO:0005515
Dere01g1537 1455 SMART WD40_4 1272 1308 IPR001680 GO:0005515
Dere01g1537 1455 SMART WD40_4 1061 1098 IPR001680 GO:0005515
Dere01g1537 1455 SMART WD40_4 1103 1142 IPR001680 GO:0005515
Dere01g1537 1455 SMART WD40_4 1187 1220 IPR001680 GO:0005515
Dere01g1537 1455 MobiDBLite consensus disorder prediction 358 374 - -
Dere01g1537 1455 Pfam WD domain, G-beta repeat 1109 1142 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1537 Dere-ChrDere01 28661241 28669577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1537 414 496 U-box Gene Family AT3G46510 51.807 1.40e-18 89.7