Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1515 ATGTCAACCTCGCCGTCTCCCGGAGGTTCTCCAGCCCCCACATCTCCGCCGGCCACTAACACCACTTCTCCTCCTCCGCCGGCCACTAACACAACCTCTCCACCGCCTCCGGTCACCCCTGCTGCACCACCCCCTGCTACTCCCTCTGCTCCACCACCGGCCACTCCTTCGCCTCCGCCGCCAACTACACCTACTCCCAGCCCTCCATCTGCCTCACCACCCTCACCGTCCACGCCGTCAACTTCGCCGCCACCGCAGTCTCCGGCCTCGCCGCCGCCTCCGTCTAGTACCAACAGTCCACCGAGTCCGGTGACTCACAGCTCACCGCCTCCTCCTTCGTCTAGCTCTGGCTCGCCTTCAACTCCGAACCGAAGCCCGCCGCCACCTGCGTCAAATTCGGCGTCTCCTTCGTCGCCGACTGTGTCAACCGGTGTTATTGTCGGAATTGCCGTTGGTGCTGTTGCGATTCTTGTAGTGTTGAGCATTTTGTGCATATGTTGTAGGAGGAAGAAGAGGAGAAGACGTGATGAGGGATACTATGTGCCGCCACGGGGACCTAAAGATGATCAATATGGTGGCCCTCCACGTCAGTGGCAACACAATGCTCCCCCTCCTGCAGACCATGTTGTCTCAGTGTTGCAAAAGCCAACGCCCCCGCCACCAGTTGCATCACGACCACCCCAATCACCAGCTTATGTACCTCAGCCTCCACCACCACCACCCTTCCTGAGTGGCAGTGGCGGATCTGGTTCCAACTATTCAGGTGGCGAAAATCCACTCCCACCTCCTTCGCCTGGTATTGCATTGGGTTTCACAAAGAGCACTTTCACATATGAAGAGTTGGCTCGGGCAACGAATGGATTCTCTGATGCCAACCTCCTTGGACAAGGTGGATTTGGATATGTGCACAAAGGAACCCTTCCAAATGGGAAGGAAGTGGCTGTCAAGCAGCTAAAGGCTGGAAGTGGGCAGGGAGAGCGCGAATTTCAAGCAGAAGTCGAGATCATTAGCCGCGTTCATCACAGACATCTCGTTTCTTTGGTTGGATACTGCATCACTGGATACCAGAGGCTGCTTGTTTATGAATATGTTCCAAACAATACACTGGAGTTTCACTTACATGGAAAAGGACGACCTACTATGGATTGGCCCATAAGAGTGAAAATTGCATTAGGATCTGCAAAAGGACTGGCATATCTCCATGAGGATTGTCATCCTAAGATCATCCATCGCGATATCAAAGCTGCTAATATACTTCTGGATTTCAAGTTTGAAGCAAAGGTTGCTGATTTTGGGCTTGCAAAGTTTTCTTCTGATGTCAATACTCATGTCTCCACTCGAGTGATGGGGACTTTCGGGTATCTGGCTCCTGAATATGCTTCCAGTGGGAAACTCACTGACAAATCAGATGTTTTCTCCTTCGGGATCATGCTCCTGGAGCTGATTACTGGACATCGACCAGTTGACCCAAGTCATACTTTCATGGAGGATAGTTTAGTGGACTGGGCAAGGCCTTTGCTTACCCGTGCTTTGGAAGATCAAGATTTTGATTCTCTGGTTGATCCAAGACTCAAAGATGAATATGACCACAATGAAATGGCTCGCATGGTTGCATGTGCTGCTGCTTGCACACGCCATTCAGCACGGCATAGGCCAAAAGTGAGCCAGGTTGTTCGTGCCCTGGAAGGGGATGTCTCTCTGGTAGATCTGAACGAGGGAATTAAACCTGGACACAGCACTGTCTACAGTTCTCGGGGAAGCTCAGATTATGACACTGCACAATACAAGGAAGACATGAAAAAATTCAGGAAAATGGCATTGGGAACCCAGGAGCATGGCGTAAGCAGCGAATACAGCGCACCTGCGAGTGACAACAGTTTATACCCATCTGGCTCAAGCAGCGAAGGCCAAAGCCGCCAGACCACCCGGGAATGGAAATGA 1941 0.5224 MSTSPSPGGSPAPTSPPATNTTSPPPPATNTTSPPPPVTPAAPPPATPSAPPPATPSPPPPTTPTPSPPSASPPSPSTPSTSPPPQSPASPPPPSSTNSPPSPVTHSSPPPPSSSSGSPSTPNRSPPPPASNSASPSSPTVSTGVIVGIAVGAVAILVVLSILCICCRRKKRRRRDEGYYVPPRGPKDDQYGGPPRQWQHNAPPPADHVVSVLQKPTPPPPVASRPPQSPAYVPQPPPPPPFLSGSGGSGSNYSGGENPLPPPSPGIALGFTKSTFTYEELARATNGFSDANLLGQGGFGYVHKGTLPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCITGYQRLLVYEYVPNNTLEFHLHGKGRPTMDWPIRVKIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFSSDVNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGIMLLELITGHRPVDPSHTFMEDSLVDWARPLLTRALEDQDFDSLVDPRLKDEYDHNEMARMVACAAACTRHSARHRPKVSQVVRALEGDVSLVDLNEGIKPGHSTVYSSRGSSDYDTAQYKEDMKKFRKMALGTQEHGVSSEYSAPASDNSLYPSGSSSEGQSRQTTREWK 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1515 646 Gene3D Transferase(Phosphotransferase) domain 1 364 570 - -
Dere01g1515 646 Gene3D Phosphorylase Kinase; domain 1 268 363 - -
Dere01g1515 646 PRINTS Proline rich extensin signature 2 14 - -
Dere01g1515 646 PRINTS Proline rich extensin signature 56 73 - -
Dere01g1515 646 PRINTS Proline rich extensin signature 16 37 - -
Dere01g1515 646 PRINTS Proline rich extensin signature 37 53 - -
Dere01g1515 646 MobiDBLite consensus disorder prediction 1 141 - -
Dere01g1515 646 MobiDBLite consensus disorder prediction 606 646 - -
Dere01g1515 646 Pfam Protein tyrosine and serine/threonine kinase 293 561 IPR001245 GO:0004672|GO:0006468
Dere01g1515 646 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 152 615 IPR047117 -
Dere01g1515 646 FunFam proline-rich receptor-like protein kinase PERK1 266 363 - -
Dere01g1515 646 MobiDBLite consensus disorder prediction 9 134 - -
Dere01g1515 646 MobiDBLite consensus disorder prediction 612 640 - -
Dere01g1515 646 SMART serkin_6 288 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1515 646 ProSiteProfiles Protein kinase domain profile. 288 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1515 646 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524
Dere01g1515 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 408 420 IPR008271 GO:0004672|GO:0006468
Dere01g1515 646 FunFam Proline-rich receptor-like protein kinase PERK1 364 572 - -
Dere01g1515 646 MobiDBLite consensus disorder prediction 174 268 - -
Dere01g1515 646 MobiDBLite consensus disorder prediction 214 244 - -
Dere01g1515 646 SUPERFAMILY Protein kinase-like (PK-like) 264 561 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1515 Dere-ChrDere01 28473929 28477731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1515 95 643 Trihelix Transcription Factor Family AT1G70460 51.087 4.90e-171 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Dere01g1515 PK_Tyr_Ser-Thr 4.3e-46 CL0016