Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1490 ATGGATGATATGGAAGATGATGCAAGGTACCCTCCGAAGCCCTACTCTTTGAACCGCAGTAACCCTTCTCATCGCCAGAAACATCCGGTTCGGGGTGTTACTTATCATCGCCCAATAACCAGTCGCTACGAGGAAGACGACGAAGTTGAAGAATATGATGAACTGGATGATTATGTCGGAGGAAATGTCCAAGAGGACGACGATGACGAGGACGATGATGATGGGGAAAATGGCTATGGTGGGAATTTTGAAGATGTTGACGAGTTTGAGAAAAACCCGAAGAAGAGGAAATTACGGGGTTCTGCTCTTTCAAACTATGAGTTTGCTCCTCGTGTTAAACCTACATATGGCAGTCGTAATTCGGCAGATGAGTGGACCGAGCACGCGACGTTTGTGTTGTTAGAGGTTTGGGGAGATAAATTTCTTCAACTTGGGAGGAAGAGTTTAAGGTCTGAGGATTGGCATGATGTTGCCGAGAAAGTTTCGGAGGAGCTGAAGATGGAAAGGACGGAGGCCCAGTGTCGGAATATGTTGGATAAATTGAAAAGAAGGTACAAGAAAGAGAAGGCGAAAATGGATGAAATGGGGCTGAATTCGACTAAATGGGCTTATTTTAAGAAGATGGATATGTTAATGGCCTCATCAGCGAGGCAAGAATATGGGTTACCCTGTGGAGTTGATTGTGGCGAGTATGTGTTCATGAATACAAGGGTTTATTTAAATCGGTCGAATGGATTTGATGAGATGAGAGATAGTCCTGGGGAGTCAGAGACTTCTGAAGACAATGATTTGGATGGACTTCCACCGAGGAGGACAGGGATTAGAGGAGATGAGGAGGAGGAATCTTCTTATAGGGTGCTGGCAGACTCTATTCAAAAGTTTGGGAAGATATATGAGAAAATCGAGAGTAGCAAGAGGCAGCAGATGATGGAGTTAGAGAAGATGAGGATGGATTTCAATAGGGAGTTAGAGCTTCAGAAGAAGCACATTTTAGAAAGGGCCCAGGCTGAAATTGCAAAAATACAGGAAGGAGATGAGGAAGACACAGACGCTTCTGCAGAGAATCTCAGTGAATGA 1077 0.4457 MDDMEDDARYPPKPYSLNRSNPSHRQKHPVRGVTYHRPITSRYEEDDEVEEYDELDDYVGGNVQEDDDDEDDDDGENGYGGNFEDVDEFEKNPKKRKLRGSALSNYEFAPRVKPTYGSRNSADEWTEHATFVLLEVWGDKFLQLGRKSLRSEDWHDVAEKVSEELKMERTEAQCRNMLDKLKRRYKKEKAKMDEMGLNSTKWAYFKKMDMLMASSARQEYGLPCGVDCGEYVFMNTRVYLNRSNGFDEMRDSPGESETSEDNDLDGLPPRRTGIRGDEEEESSYRVLADSIQKFGKIYEKIESSKRQQMMELEKMRMDFNRELELQKKHILERAQAEIAKIQEGDEEDTDASAENLSE 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1490 358 Coils Coil 171 198 - -
Dere01g1490 358 Pfam Myb/SANT-like DNA-binding domain 123 210 IPR044822 -
Dere01g1490 358 MobiDBLite consensus disorder prediction 1 97 - -
Dere01g1490 358 MobiDBLite consensus disorder prediction 246 282 - -
Dere01g1490 358 Gene3D - 125 187 - -
Dere01g1490 358 MobiDBLite consensus disorder prediction 248 282 - -
Dere01g1490 358 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 97 345 IPR044823 -
Dere01g1490 358 MobiDBLite consensus disorder prediction 45 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1490 Dere-ChrDere01 28242622 28243698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1490 123 347 Trihelix Transcription Factor Family AT1G54060 31.250 4.41e-22 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dere01g1490 Myb_DNA-bind_4 3.3e-19 CL0123