LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g1476	ATGGATTTAGAAGAAAAGTTCCTTGCTAAAGTTTCTGGTCTTCAAAGCCTTTCTTCCAGTGTGCAAAGCACTCCGGAGAAAAATGGTCATTCAGATGATGCCTCAAGAAGTCCAGAACTCCTGCAGGAGTTCTTGAAATCTGGTCCAAAAAAGGAACTTCTTCGAACGTGCTTTGATAAGGACAAAAAGAACATTTCATCAAAAAGCAGGATGACTGAAAATAAGTCAACCAATAAGATCATCAAGAAACAGGACTCAAAAAAGGCTTCTAGCAGCAACCAGCCCTCTAAAAAGCAACATAGAAAGGGAGAAAATCCCACAAGGCTCCTGCCAGCTCCTGACCAGTCTTCTGATTTTGGGCATGCAAACTCCTGGATCTGTAAAAATTCTGCTTGTAGAGCTGTTCTATCTATAGATGACACGTTTTGTAGAAGGTGCTCTTGCTGTATCTGTCACCTTTTTGATGATAACAAAGATCCTAGTCTTTGGTTGGTCTGCACATCTGAATCTGCTCAGGGTGATTCCTGTGGATTGTCTTGCCATATTGAATGTGCCATTCAACACGAAAAAGTAGGAGTTGTTGATCACGGACAACTGATGCAACTAGATGGTGGTTATTGTTGTGCATCTTGTGGTAAAGTTACTGGGATACTTGGATGCTGGAAGAAGCAGCTAAGTATAGCAAAAGATGCTCGGCGTGTAGATGTACTCTGTTACAGAATATATTTGAGCTACAGGCTTCTAGATGGGACTTCGAGGTTTAAAGAACTGCATGAGATTGTACAAGAGGCGAAGGCTAAACTGGAAACAGAAGTTGGTCCAGTTAATGGAGTTTCTGCCAAGATGGCACGAGGCATTGTCAGCAGATTATCTATTGCCAGTGATGTGCAGAAGCTGTGCTCCCTTGCTGTTGAGAAAGCTGATGGGTGGCTGGCCACTGTTTCCAATGTAAACCCAGATTCCAGAGAGGGTTCACTTCCTGCTGCGTGCAAGTTTGTTTTTGAAGAAGTAACAGCTTCCTCAGTCAAAATCATTTTGATTGAAATGTCAAATACATCATCCGAGGACATCAAAGGTTTCAAGCTCTGGTATTACAAGAGTGGGGAGGAATTGCATACTAAAGATCCTGTTTGTGTTTTTCCAAAATCTCAGAGGAGGATTCTGATATCAAACCTCCAACCTTGCACAGAATATACATTTCGGATTATATCTTACACTGATATGTGTGACCTGGGTCATTCTGAGGCCAAATGTTTCACCAAGAGTGTTGAAATAATTAAAAGAAATCCCTCTTCATTAGTTGCTTTGAATCGTATTAAAGAAAACCATATAACTGGAGGAACTTCTTCTGACTCCAAAGCAGAGCCCAATCCCACAATGGCAGACTCTGGATTTAAGGTTCGAGACCTGGGAAAAATCTTGCGTTTTGCTTGGGCTCAAGAACAAGGTTGCTTTGAGGGGTTTTGCTGTGCTGATGTGAAAAATTGTTGCGTAGGAAGTGAAATGGTCAGGCCTAAATATTCAGAAGAGACTTTGCCTAAAGTTTCACGAGGCCTTGATTTAAATGTTGTTTCGGTTCCTGATTTAAATGAAGAATTAACACCTCCTTTTGAGTCTTCCAGGGATGAAGATAATGGTTGCACTTTGCAGCAGGCAGTTGGGGCAGATGATGACGCTGCTTCTCATGATATTGAGAAAAATGGTTTAGCAAGATCTCATGGTAGTGGTGACTCCCAAACCTGGACCCACAGGCCAACTGGAGAAGTGCCGGCTGTTGACTCTCGTGTGGATGCTGCCTGTAGGAAAAGAGTCGCAAGCACAAATGAAGAGACTCATGATTGTGACAGCACTTTAATAAATGGATCTCCTTTACGCATATCTGATGGTTCGTGTTCCCTGGATGAGAACTTCGAGTATTGTGTGAAAGTAATTCGTTGGCTAGAATGTGAGGGTCACATTAAACAGGAATTTCGGTTGAAATTGCTAACATGGTTTAGTTTGAGGTCAACAGAGCAAGAACGTAGGGTGGTCAATACCTATATTCAAACTCTGATCGATGATCCAAGTAGTTTGGCTGGACAACTGGTTGACTCTTTTTCTGATATTATATCTAACAAGAGGCCAAGAAATGGATTCTGCGGTAAGCTATGGCATTAA	2157	0.4196	MDLEEKFLAKVSGLQSLSSSVQSTPEKNGHSDDASRSPELLQEFLKSGPKKELLRTCFDKDKKNISSKSRMTENKSTNKIIKKQDSKKASSSNQPSKKQHRKGENPTRLLPAPDQSSDFGHANSWICKNSACRAVLSIDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESAQGDSCGLSCHIECAIQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLSIAKDARRVDVLCYRIYLSYRLLDGTSRFKELHEIVQEAKAKLETEVGPVNGVSAKMARGIVSRLSIASDVQKLCSLAVEKADGWLATVSNVNPDSREGSLPAACKFVFEEVTASSVKIILIEMSNTSSEDIKGFKLWYYKSGEELHTKDPVCVFPKSQRRILISNLQPCTEYTFRIISYTDMCDLGHSEAKCFTKSVEIIKRNPSSLVALNRIKENHITGGTSSDSKAEPNPTMADSGFKVRDLGKILRFAWAQEQGCFEGFCCADVKNCCVGSEMVRPKYSEETLPKVSRGLDLNVVSVPDLNEELTPPFESSRDEDNGCTLQQAVGADDDAASHDIEKNGLARSHGSGDSQTWTHRPTGEVPAVDSRVDAACRKRVASTNEETHDCDSTLINGSPLRISDGSCSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTYIQTLIDDPSSLAGQLVDSFSDIISNKRPRNGFCGKLWH	718

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g1476	718	Gene3D	Immunoglobulins	312	416	IPR013783	-
	Dere01g1476	718	MobiDBLite	consensus disorder prediction	64	114	-	-
	Dere01g1476	718	SUPERFAMILY	Fibronectin type III	333	408	IPR036116	GO:0005515
	Dere01g1476	718	MobiDBLite	consensus disorder prediction	11	41	-	-
	Dere01g1476	718	MobiDBLite	consensus disorder prediction	64	86	-	-
	Dere01g1476	718	Pfam	PHD - plant homeodomain finger protein	127	245	IPR032881	-
	Dere01g1476	718	ProSiteProfiles	Fibronectin type-III domain profile.	326	425	IPR003961	GO:0005515
	Dere01g1476	718	PANTHER	VIN3-LIKE PROTEIN 2-RELATED	16	718	IPR044514	GO:0010048\|GO:0040029
	Dere01g1476	718	CDD	FN3	331	407	IPR003961	GO:0005515
	Dere01g1476	718	MobiDBLite	consensus disorder prediction	12	28	-	-
	Dere01g1476	718	MobiDBLite	consensus disorder prediction	567	588	-	-
	Dere01g1476	718	MobiDBLite	consensus disorder prediction	444	463	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g1476	Dere-ChrDere01	28116326	28123301	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g1476	88	711	PHD Gene Family	AT3G24440	47.492	1.12e-180	526