Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1428 ATGGCCGAATTCACAACAGATTTTCAAAGCCTTAGACCCTCTTTTCCTTTCTCAGATATTGATCCAAGCTTGGAACTTATAAACCAATTCACAGGAATGATGAACCCACCTGTCCTGGACAATTCTAGTCTGAACTTCCAGAGCTTGATTCCTTCCTCTCAAGAACCTGATTTTCCAGGAAACTTGGAAGGAACTTTCCCTGCTTTTCCAGCAGAAAATGAAATCCATGACAGTAAAAAAAGGAAAGCGATGGATGTGCCAGAGACTAGTTTAGCAAATCCAACTCCTGCAGTTTCTGAATGTGGAAGCAAGATGAAGAGTAGTTCTGGAAGAGTTAAGAGAGTGAAGAGCAATGTAACAGATGAAGCTAAACCAAAGGAGGTGGTTCATGTCAGAGCCAGAAGAGGACAAGCTACGGACAGTCATAGTTTAGCAGAAAGGGTTAGGAGAGGGAAAATCAATGAAAAGATAAGATGCTTGCAGAATATTGTCCCAGGATGTTACAAGACCATGGGCATGGCAGTGATGTTGGACGAGATCATAAACTATGTCCACTCCTTGCAGCATCAAGTGGAGTTCCTGTCCATGAAACTCACGGCAGCTAGTACCTTCTACGACTTCAATCTAGAGATAGATGCGTTAGAAACAATGCAGAGAGCCAAGGCATCCGAGGCAAAAGGGTTATCCAGAAATGGGAGAGAAGGATATGGTGGAGAGATTTCTTATTGCTTTCAACCAACTTGGCCCCTCTGA 753 0.4329 MAEFTTDFQSLRPSFPFSDIDPSLELINQFTGMMNPPVLDNSSLNFQSLIPSSQEPDFPGNLEGTFPAFPAENEIHDSKKRKAMDVPETSLANPTPAVSECGSKMKSSSGRVKRVKSNVTDEAKPKEVVHVRARRGQATDSHSLAERVRRGKINEKIRCLQNIVPGCYKTMGMAVMLDEIINYVHSLQHQVEFLSMKLTAASTFYDFNLEIDALETMQRAKASEAKGLSRNGREGYGGEISYCFQPTWPL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1428 250 CDD bHLH_AtBPE_like 127 212 - -
Dere01g1428 250 Pfam Helix-loop-helix DNA-binding domain 141 188 IPR011598 GO:0046983
Dere01g1428 250 Gene3D - 134 204 IPR036638 GO:0046983
Dere01g1428 250 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 79 215 IPR024097 GO:0006355
Dere01g1428 250 MobiDBLite consensus disorder prediction 78 122 - -
Dere01g1428 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 205 IPR036638 GO:0046983
Dere01g1428 250 FunFam transcription factor BEE 3-like 134 205 - -
Dere01g1428 250 SMART finulus 143 193 IPR011598 GO:0046983
Dere01g1428 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 187 IPR011598 GO:0046983
Dere01g1428 250 MobiDBLite consensus disorder prediction 92 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1428 Dere-ChrDere01 27461991 27463270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1428 1 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 49.451 1.86e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere01g1428 HLH 0.00017 No_clan