Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1427 ATGAAGTGCCATGAACATTTCATGGCTGGCAATGACGACCATGCAATGTTTTTCCTCTCAGTGATAATACTGATGTCTTCTTCAAAGAGCGAGAGCAATTGTAGTGAAGATGATAATGAACTTAGAAGAGGACCATGGACTCTTGAAGAGGACACTCTGCTCACCCAGTACATCTCTACTCATGGGGAAGGGCGATGGAATTTGCTGGCAAAACGTTCAGGGTTAAAGAGAACAGGAAAGAGTTGCAGATTAAGGTGGCTTAATTATCTGAAGCCAGATGTAAAGCGAGGAAATTTAACCCCAGAAGAGCAGATTTTGATTCTTGAGCTCCACTCAAAGTGGGGCAACAGGTGGTCGAAGATTGCACAACATCTTCCTGGGAGGACAGACAATGAGATCAAGAACTACTGGAGAACTCGGATTCAGAAGCAAGCAAAACACTTGAAAATTGACCCAAGCAGCCCAGAGTTTCAAGAATTCGTTAGGCGATTTTGGATGCCAAAGTTGCTCCAGAAAACAAGAGAAACACCTTCTTTTCCTGCCATGTCAATCCAAAACCAGACCATTCCTTTGCCTTTTGACTCTGTTTCTCAGTATTCACAGTTAGAGACAGTACCAACACTGATTCCTTCGCAGGGACCTTATGTGATGAATGAAACAGTTCAGAATAGTTCGTGCATGTCCACTTCTTCTTCTTCTTCAGAATCATCATACATCCCAGAAGTGTCTCAGTTCCATGCCTTAGATAACAGTGACATGAGCTCCTTTGTGTATGATGGCTACTATGTAAACAACAATACCTATGACATGGAAACATTCAATTTGGCAACTACAGTGGCTGCTGAGGATATGGAAAGCAACTGGGTGAACAATGATATTTCATGTAGCATGTGGGGCATGGATGAACTATGGCAGTTCAAAAACTAA 927 0.425 MKCHEHFMAGNDDHAMFFLSVIILMSSSKSESNCSEDDNELRRGPWTLEEDTLLTQYISTHGEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPEEQILILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQAKHLKIDPSSPEFQEFVRRFWMPKLLQKTRETPSFPAMSIQNQTIPLPFDSVSQYSQLETVPTLIPSQGPYVMNETVQNSSCMSTSSSSSESSYIPEVSQFHALDNSDMSSFVYDGYYVNNNTYDMETFNLATTVAAEDMESNWVNNDISCSMWGMDELWQFKN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1427 308 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 37 243 IPR044676 GO:0003700|GO:0006355|GO:0043565
Dere01g1427 308 Gene3D - 99 142 - -
Dere01g1427 308 FunFam MYB transcription factor 99 141 - -
Dere01g1427 308 FunFam Myb transcription factor 43 95 - -
Dere01g1427 308 CDD SANT 100 139 IPR001005 -
Dere01g1427 308 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Dere01g1427 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 90 IPR017930 -
Dere01g1427 308 SUPERFAMILY Homeodomain-like 41 137 IPR009057 -
Dere01g1427 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 145 IPR017930 -
Dere01g1427 308 Gene3D - 43 95 - -
Dere01g1427 308 SMART sant 42 92 IPR001005 -
Dere01g1427 308 SMART sant 95 143 IPR001005 -
Dere01g1427 308 CDD SANT 45 90 IPR001005 -
Dere01g1427 308 ProSiteProfiles Myb-like domain profile. 38 90 IPR001005 -
Dere01g1427 308 Pfam Myb-like DNA-binding domain 96 139 IPR001005 -
Dere01g1427 308 Pfam Myb-like DNA-binding domain 43 90 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1427 Dere-ChrDere01 27451230 27453361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1427 38 307 MYB Transcription Factor Family AT1G68320 43.919 8.24e-80 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere01g1427 Myb_DNA-binding 1.7e-15 CL0123