Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1420 ATGGCGACGCCGTTGGCCGGACTGCAGCACTTGGACGGAGCTGGAGGAGTAGCGGTGCTTTCCAATTCCGTGAACAAGGTCGATTCTTCCTCTTCCACATCCAATGGCGGCTTGAAGTGCTCCAAATTGGAGTCGCCAATTCTAATTTTCTTATTCTTCCACAAAGCGATTCGGAATGAACTTGATGCTCTTCACCGATTAGCTATGGCATTTGCCACGGGCAATCGCTCTGATATTCTGCCGCTGTTCGAACGCTATCATTTTCTGAGATCAATTTACAGACACCACTCCAATGCCGAAGATGAGGTGATTTTTCCAGCTCTTGATATGCGTGTGAAAAATGTAGCACAGACATATTCTCTCGAACACAAGGGTGAAAGTGATCTTTTTGATCATCTATTTGAGCTGTTAAATTCTACGGTCCAGAATGATGAAAGTTTCCCAAGGGAGTTAGCGTCCTGCACGGGAGCTCTGCAGACATCACTTAGTCAACACATGGCTAAGGAAGAGGAGCAGGTGTTTCCACTGCTTATTGAAAAGTTCTCTCTTGAGGAACAGGCATCTTTAGTTTGGCAATTTCTGTGCAGTATTCCTGTGAATATGATGGCAGTATTTCTTCCGTGGCTTTCAACATCTATATCACCTGATGAATCTCAGGATTTGCAGAAGTGCTTAAGCAAGATAGTGCCAGACGAAAAGCTTCTTCAAAAGGTTATTTTCACTTGGATGGAAGGGAGAAACGGTGCTACCACAGTCGAAAGTCATGTAAATCATTCTCTGGTTCAAGGTTGCCCTTGCCCATTAACCCATCAGATTGAGAAAGTATACTGTGTGTGTGAGTTCACAACAACTGGAAAAAGAAAATTTTCTGAATCTAGTCTGGATGTTTCTGATATGACTGGAACACATCCTATAGATGAAATATTGTTATGGCATAATGCAATTAAAAAAGAGTTAAGTGAGATAGCAGTGGAGACTAGAAAGATACAGCTCTCTGGAGATTTTACTAATCTATCAGCTTTCAATGAAAGATTGCAATTTATCGCTGAAGTGTGCATATTTCACAGTATCGCAGAGGACAATGTTATATTTCCAGCAGTAGGTGGTGAATTTTCTTTCTTCCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTTCGGAGTTTAATAGAAGCCATTCAAAATGAAGGAGCAGCATCTAGTTCAGAAGCTGAATTTTATTCCAAGTTATGCTCACATGCTGATCAGATAATGGAAACTATACAGAGGCATTTCCATAATGAAGAAGTTCAAGTTCTTCCACTTGCTCGGAAGCACTTTAGCTTCAGAAGGCAACGTGAACTTCTGTATCAAAGTCTGTGCATGATGCCTTTGAAATTAATTGAACGCGTCCTGTCATGGTTGGTAGGATCATTAACTGAGGACGAGGTGAAGACGTTTCTAAAAAACATGAAATTGGCAGCTCCAGCAACAGATTCTGCTCTAGTCACACTTTTCTGTGGTTGGGCTTGCAAGGCTCGTAATGATGGCATGTGTTTGTCTTCAAGTGCATCAGGTTGCTGTCCTGCTCAAAGACTTTCTGATATTGAAGAAAATTTCGCTCAGTCGTCCTGTCCTTGTGCTTCTACATTTTCTGCTAGAGATTGCTCAGTAGTTGTTGAAGTAGATGAGAACAAAAGACCAGTCAAGCAAAACACATTGGAGTGCTGCAAGAATATAGATGTCCCTGAAACTTCAGGGACTGAAAGTATTCAAAAACAATGTTGTAATGCTCGATCTTGTTGTGTGCCAGGTTTAGGAGTAAGCAGTAAAAATCTGGGGCTAAGTTCCCTTTCTACCGTCAAGTCTTTACGCTCCTTGTCATTCAGCTCTTCTGCCCCATCTCTGAATTCCAGCCTTTTCATATGGGAAACAGATAACAACTCTTGTGATAACTCCGCAGAAAGGCCAATTGATACTATTTTTAAATTCCACAAAGCTATACGCAAAGATTTGGAGTATTTAGATGTTGAATCTGGAAAGCTTATTGACAGTGATGAGATTATTCTTCGCCAGTTTAATGGAAGATTTCGTCTCTTGTGGGGTTTATATAGAGCTCACAGTAATGCAGAAGATGATATAGTATTTCCAGCACTGGAATCCAAAGAGTCCCTTCATAATGTGAGTCATTCATATATGCTGGACCATAAACAGGAAGAAAAATTATTTGAAGATATCTCCTGTGTTCTTTCTGAGCTTTCTTTCCTTCATGAAGACTTGCAGAGGACCACTATGTCAAATGAAAGTAATTTTGAAACTTCTGATGCCAATGTTAGAGATAATATCAGAAAGTACAATGAGCTAGCAACTAAACTTCAAGGGATGTGCAAATCCATAAGAGTGACCCTGGATCAGCATATTTTCAGGGAAGAGTGTGAGCTCTGGCCATTGTTTGGGAGACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGAACTACAGGGGCTGAAGTTCTCCAGTCAATGTTACCGTGGGTAACTTCTGCACTTACTCAGGATGAACAGAACAAAATGATGGACACATGGAAGCAGGCAACTAAGAATACCATGTTCAATGAATGGCTTAATGAATGCTGGAAAGAAAGTCCAGCGGCTATATCACTAACAGAAACATCAGATAAAAATGCTTCTCATCGAGCTGCTGAATATCAAGAAAACTTGGACCTGAATGATCAGATGTTTAAGCCTGGTTGGAAAGACATATTCCGGATGAATCAGAATGAGCTTGAGTCAGAGATCCGGAAGGTTTATCAGGACTCAACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAGAATCTAATGACTAGTCGCTGGATAGCTGCACAGCAAAAGTTGCCTAAAGGTATAGCTGAGGAGTCTTCAGATGGTGAAGATATAGAAGGACGCTCGGCGTCATTTAAGGACCAGGAGAGACAAATATTTGGGTGTGAACACTATAAGAGAAACTGCAAACTTCGAGCTGCATGTTGTGGCAAGTTCTTTACTTGTAGATTTTGCCATGACAATGTGAGCGATCACTTGATGGATAGAAAAGCAACATCAGAAATGATGTGTATGCGTTGCCTGACTGTACAGGCAGTTGGACCTATATGCCTGACACCTTCATGTAATGGATTTTCAATGGCAAAATACTATTGCAATATATGCAAATTTTTTGATGATGAAAGGAATGTTTATCATTGCCCGTTTTGCAATTTATGCCGTGTGGGGAGAGGGCTTGGGATTGATTATTTTCATTGTATGAAATGCAACTGCTGCCTGGGGATAAAATCGGCATCTCATAAGTGCCTGGAGAAAGGCTTAGAAACGAATTGCCCAATTTGCTGTGACTTCTTATTCACTTCAAGTGCCACAGTCAGAGCTCTACCATGTGGCCATTATATGCATTCAGCTTGCTTTCAGGCATACACTTGTAGTCACTACACATGTCCAATTTGCAGCAAATCATTGGGAGATATGGCGGTTTACTTCGGCATGCTTGATGCTTTATTGGCTGCTGAGGAGCTTCCTGAAGAGTACAGGGACCGTTATCAGGACATACTGTGCCATGACTGTGAACGAAAGGGCAGTTCGCGCTTCCACTGGTTATATCACAAGTGTGAATTTTGTGGCTCATACAATACCCGGGTGATCAAGTGTGAGCCATCAAATTCCCGCTGCTCTTAG 3723 0.4155 MATPLAGLQHLDGAGGVAVLSNSVNKVDSSSSTSNGGLKCSKLESPILIFLFFHKAIRNELDALHRLAMAFATGNRSDILPLFERYHFLRSIYRHHSNAEDEVIFPALDMRVKNVAQTYSLEHKGESDLFDHLFELLNSTVQNDESFPRELASCTGALQTSLSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAVFLPWLSTSISPDESQDLQKCLSKIVPDEKLLQKVIFTWMEGRNGATTVESHVNHSLVQGCPCPLTHQIEKVYCVCEFTTTGKRKFSESSLDVSDMTGTHPIDEILLWHNAIKKELSEIAVETRKIQLSGDFTNLSAFNERLQFIAEVCIFHSIAEDNVIFPAVGGEFSFFQEHAEEESQFNDFRSLIEAIQNEGAASSSEAEFYSKLCSHADQIMETIQRHFHNEEVQVLPLARKHFSFRRQRELLYQSLCMMPLKLIERVLSWLVGSLTEDEVKTFLKNMKLAAPATDSALVTLFCGWACKARNDGMCLSSSASGCCPAQRLSDIEENFAQSSCPCASTFSARDCSVVVEVDENKRPVKQNTLECCKNIDVPETSGTESIQKQCCNARSCCVPGLGVSSKNLGLSSLSTVKSLRSLSFSSSAPSLNSSLFIWETDNNSCDNSAERPIDTIFKFHKAIRKDLEYLDVESGKLIDSDEIILRQFNGRFRLLWGLYRAHSNAEDDIVFPALESKESLHNVSHSYMLDHKQEEKLFEDISCVLSELSFLHEDLQRTTMSNESNFETSDANVRDNIRKYNELATKLQGMCKSIRVTLDQHIFREECELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECWKESPAAISLTETSDKNASHRAAEYQENLDLNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKGIAEESSDGEDIEGRSASFKDQERQIFGCEHYKRNCKLRAACCGKFFTCRFCHDNVSDHLMDRKATSEMMCMRCLTVQAVGPICLTPSCNGFSMAKYYCNICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKSASHKCLEKGLETNCPICCDFLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQDILCHDCERKGSSRFHWLYHKCEFCGSYNTRVIKCEPSNSRCS 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1420 1240 SUPERFAMILY Zinc hairpin stack 1061 1117 IPR037275 -
Dere01g1420 1240 CDD Hr-like 653 810 - -
Dere01g1420 1240 ProSiteProfiles Zinc finger CHY-type profile. 988 1057 IPR008913 GO:0008270
Dere01g1420 1240 SUPERFAMILY RING/U-box 1121 1176 - -
Dere01g1420 1240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1119 1168 IPR013083 -
Dere01g1420 1240 CDD Hr-like 306 435 - -
Dere01g1420 1240 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 694 1233 - -
Dere01g1420 1240 Pfam Hemerythrin HHE cation binding domain 651 811 IPR012312 -
Dere01g1420 1240 Pfam Hemerythrin HHE cation binding domain 303 437 IPR012312 -
Dere01g1420 1240 Pfam Hemerythrin HHE cation binding domain 51 177 IPR012312 -
Dere01g1420 1240 FunFam Zinc finger protein BRUTUS 646 875 - -
Dere01g1420 1240 Pfam Zinc-ribbon 1171 1228 IPR039512 -
Dere01g1420 1240 CDD Hr-like 49 175 - -
Dere01g1420 1240 SMART ring_2 1124 1165 IPR001841 -
Dere01g1420 1240 SUPERFAMILY CHY zinc finger-like 988 1051 IPR037274 GO:0008270
Dere01g1420 1240 Gene3D - 1195 1235 - -
Dere01g1420 1240 Gene3D nmb1532 protein domain like 644 884 - -
Dere01g1420 1240 FunFam Zinc finger protein-related isoform 1 1119 1168 - -
Dere01g1420 1240 Gene3D nmb1532 protein domain like 306 453 - -
Dere01g1420 1240 Gene3D nmb1532 protein domain like 44 195 - -
Dere01g1420 1240 ProSiteProfiles Zinc finger RING-type profile. 1124 1166 IPR001841 -
Dere01g1420 1240 Pfam Ring finger domain 1123 1165 IPR001841 -
Dere01g1420 1240 ProSiteProfiles Zinc finger CTCHY-type profile. 1060 1123 IPR017921 -
Dere01g1420 1240 CDD RING-H2_Pirh2-like 1123 1166 - -
Dere01g1420 1240 Pfam CHY zinc finger 995 1070 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1420 Dere-ChrDere01 27371681 27381842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1420 1 1240 C2H2 Transcription Factor Family AT3G18290 67.248 0.0 1693