Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1406 ATGGATACTAATCCTACCCTCTTGCTTAAATCAATAGTCACCATTGCCAACTTCTTCTTCTTCTTCTTAACAACTTTGCCACTATCCTATTCTCAAGAAAATGACACAAACTCTGTGTGCAGCAAACCGTACAGTTGTGGATCTCTCACAAACATTTCCTACCCTTTCTGGGGACACAACCGACCCAATTACTGTGGCAGAAATGGCTTCCAGCTAGAGTGCTTGAATGATCAAAACACTACCGTTCAAGCTGGCTCCCAAACTTTCAATGTACTGGAGATTAACCAAAGTGCTTCTGTCATGCGAATTGTGCCAAGAGAAGTAGCATATGATCATTGCCCTCCCAATATTACCAACACTTCTCTGAGTGGCAGTCCCTTTCGTTTTCTCCCAACTGTTCAGAACATCACTATATTTTACGATTGTCCCTCTCAGATATCTGGTGTGAACAACTTCACGTGCCAGAATAATTCTACTAAACATGCATTCTATGTGAGGGGAACTCAGTTGCAGCAATTCTCAGGCCTTGGGAACTGCGGGTCTGGTATTCAAGTGCCGGTTTCAGAGGATGTTCCTTTGGATTCGCTGAAGAACGCTCTGGATGAAGGGTTTGATGTGCAGTATGATGCATCTGAGTGTACAGCATGCAGGGTCTCTGGAGGAATATGTGGAACGAATCAGAACAATAGCTCTAACTTTTCATGTTATTGCAGTGATGGAACCCATGCTTCATCCTGTTCATCTCGCAGCAGGAGCAGCAGTAAAAGCAACAGAGTATTAAAGCTAGTTTTAGGTTTCGTAGCCACAGGAATTGGATTACCTCTCATAGCTATCAAGAAAGCAATGTTGCCAGAATCCCACTGTAAAGAAGATGAACAATACTTGGCCTGCCAGCACCCATTCAATTGTGGAAAACTGCAAGATATTGGTTACCCTTTCTGGTCAGATGATGGACATCGTTATTGTGGCAGAGACGGATTTCGGCTCCTTTGTGAAGAAAATCAATCCCCTTTGATTCGAGTCGGCTCACAGAATTTCAGTATCCTAAGGATTAATCAGTACTCTTACACCATGACAATGGTGCGGACAGACCTTGTCCTTGATCTTTGTTCTTCCAATTTGACTAGCACTTCCTTGAATACCCAACTCAATCTCTTCCATTATGGCCAAGATGTTAAGAACGTGAGCCTGTTCTACGACTGCCCCTCAGATATTTTGATCGGCCGAAACAACTTCACATGCAAGAATCTCCCTAATAAACTTGTTTTCTACGAGGAAGATACTCAGTTGCAGCAATTCTCTGAACTTAACAAATGTAAGCGTCGTATTCAAGTGCCGGTCTCAAAGAATACTGTTCTGGATCCTGAAGAAGGTAGGGAAGCCCTTGATAGAGCTTTGCGTGATGGGTTTGGTGTGCATTATACTGTAGACGGTCCTCCTTGCGGAAGATGCTTGGAGTCTGGAGGATCCTGTGGGTCGAATAATGAGTCACAATTTACCTGTCATTGCGTGGATGGGCCTCATGCTGCTGACTGTAATGATTCCACTGGGTGGTTTAAAATGAGCTTCTCCTTTTTTATGAGGGATCTGTTATATTTCTTACCCATCGATTTACTTGCTTTTTATGTACCAGGTTTTATAGGTGGAGCAGCTGGAACGCTACTAATATGTATTACTATTTTCTGTTTTACAATCAAATCATTGAGACAGAAAATAGTATTTTGGAAGACAACTAAGGGGAACCAAGAAATCGAGGCCTTCATTAGATACCATGGACCTCTGGCTCTCACAAGATATAAATTTGCGGATGTCAATAAAATGACCAAATCTTTTGAAGTTAAACTGGGACAAGGTGGTTATGGTACTGTATATAAAGGAAAGCTACTCAATGGACGCCCAGTGGCTGTAAAGTTGTTGAATCCATCCAAAGGGAACGGGGAAGAATTTATCAATGAGGTTGCTAGCATCAGCAGAACTTCCCATGTTAATGTTGTCACCCTTCTTGGGTTTTGTTTAGAAGGCAGGAAGAAGGCTCTCATTTATGAATTCATGGCCAATGGATCCCTTGATAGTTTCATTTCCAACAAGGCAAATAAAACTACTCCATCCTTGAGTTGGGAAAACTTGTACCAAATTGCGATTGGAACAGCTCGAGGGCTTGAATACTTGCATAAAGGATGCAACACTCGAATTCTGCATTTTGACATAAAGCCACATAACATCCTTTTGGATGAAAGCTTTTGCCCCAAGATCTCAGATTTTGGGCTTGCTAAGCTTTGTCCTAGGAAAGAAAGCATTATTTCAATTTCGGAAGCTAGAGGGACTATAGGATATCTTGCTCCAGAAGTTTGGAATAGACATGTTGGAGGAGTTTCCCATAAGTCTGATGTTTATAGCTATGGAATGATGCTGTTAGACATGGCTGGAGGGCGAAAGAACATGAATACTGAAACCAATTGCATGACTGAGATTTATTTTCCCGATTGGATTTATGATCAACTTGAACGAGGCAATGATTTGGGATGTGATGGGGCGATCGCGACAGAGGAAAATGATATTGCAAAGAAAATGACCATTGTGGGCTTGTGGTGTATTCAAACATTTCCAACACAAAGACCTACAATAAGTAGAGTGATTGAGATGTTAGAAGAGAGCCTAGATTCTCTGGAAATGCCACCGAAGCCTGCCATGTCTTCCCCTGCAAGATTAGAACTAGAATCTTCCACTACTACCACTACATATTAG 2745 0.4204 MDTNPTLLLKSIVTIANFFFFFLTTLPLSYSQENDTNSVCSKPYSCGSLTNISYPFWGHNRPNYCGRNGFQLECLNDQNTTVQAGSQTFNVLEINQSASVMRIVPREVAYDHCPPNITNTSLSGSPFRFLPTVQNITIFYDCPSQISGVNNFTCQNNSTKHAFYVRGTQLQQFSGLGNCGSGIQVPVSEDVPLDSLKNALDEGFDVQYDASECTACRVSGGICGTNQNNSSNFSCYCSDGTHASSCSSRSRSSSKSNRVLKLVLGFVATGIGLPLIAIKKAMLPESHCKEDEQYLACQHPFNCGKLQDIGYPFWSDDGHRYCGRDGFRLLCEENQSPLIRVGSQNFSILRINQYSYTMTMVRTDLVLDLCSSNLTSTSLNTQLNLFHYGQDVKNVSLFYDCPSDILIGRNNFTCKNLPNKLVFYEEDTQLQQFSELNKCKRRIQVPVSKNTVLDPEEGREALDRALRDGFGVHYTVDGPPCGRCLESGGSCGSNNESQFTCHCVDGPHAADCNDSTGWFKMSFSFFMRDLLYFLPIDLLAFYVPGFIGGAAGTLLICITIFCFTIKSLRQKIVFWKTTKGNQEIEAFIRYHGPLALTRYKFADVNKMTKSFEVKLGQGGYGTVYKGKLLNGRPVAVKLLNPSKGNGEEFINEVASISRTSHVNVVTLLGFCLEGRKKALIYEFMANGSLDSFISNKANKTTPSLSWENLYQIAIGTARGLEYLHKGCNTRILHFDIKPHNILLDESFCPKISDFGLAKLCPRKESIISISEARGTIGYLAPEVWNRHVGGVSHKSDVYSYGMMLLDMAGGRKNMNTETNCMTEIYFPDWIYDQLERGNDLGCDGAIATEENDIAKKMTIVGLWCIQTFPTQRPTISRVIEMLEESLDSLEMPPKPAMSSPARLELESSTTTTTY 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1406 914 ProSitePatterns Protein kinases ATP-binding region signature. 615 637 IPR017441 GO:0005524
Dere01g1406 914 Pfam Wall-associated receptor kinase galacturonan-binding 297 361 IPR025287 GO:0030247
Dere01g1406 914 Pfam Wall-associated receptor kinase galacturonan-binding 40 104 IPR025287 GO:0030247
Dere01g1406 914 ProSiteProfiles Protein kinase domain profile. 609 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1406 914 Pfam Protein kinase domain 612 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1406 914 SMART serkin_6 609 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1406 914 SUPERFAMILY Protein kinase-like (PK-like) 596 883 IPR011009 -
Dere01g1406 914 Gene3D Transferase(Phosphotransferase) domain 1 684 893 - -
Dere01g1406 914 CDD STKc_IRAK 615 884 - -
Dere01g1406 914 Pfam Wall-associated receptor kinase C-terminal 425 506 IPR032872 -
Dere01g1406 914 Pfam Wall-associated receptor kinase C-terminal 159 240 IPR032872 -
Dere01g1406 914 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 285 889 IPR044652 GO:0004672
Dere01g1406 914 MobiDBLite consensus disorder prediction 889 914 - -
Dere01g1406 914 Gene3D Phosphorylase Kinase; domain 1 574 683 - -
Dere01g1406 914 ProSitePatterns Serine/Threonine protein kinases active-site signature. 731 743 IPR008271 GO:0004672|GO:0006468
Dere01g1406 914 FunFam PR5-like receptor kinase 684 894 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1406 Dere-ChrDere01 27212680 27219652 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1406 291 910 Receptor kinase-like Gene Family AT1G66910 41.590 4.33e-149 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Dere01g1406 Pkinase 2.8e-43 CL0016