Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1403 ATGGAAGCCCATCTCTTGTTCCCTACCACCGTCATCACCATCTCCTTCTTCCTAATCATGATGCCCGAATCCCACTGTCAAGAAGATGAACTATACTTGGCCTGCCAGCACTCATTCAGTTGTGGAACGCTGCAAGATATTAGTTACCCTTTCTGGTCAGATAATGGACGTCGTTATTGTGGCAGAGACGGCTTCCAGCTCCATTGTGTAAAAAATCAACCCCCTTCTATTCGAGTCGGCTCACAGAATTTCAGTATCCTAAGGATTGATCAGTACTCTTACACCATGACAATGGTGCGGACAGACCCTGTCCTTGATCTTTGTTCTTCCAATTTGACTAGCACTTCCTTGAATACCCAACTCAATCTTTTCCATTATGGCCGAGATGTTAAGAACGTGAGCCTGTTCTACGACTGCCCCTCAGATATTTTGATCGGCCGAAACTTTACATGCAAGAATCTCCCTAATAAACTTGTTTTCTACGAGGAAGATACTCAGTTGCAGCAATTCTCTGAACTTTACAATTGTAAGCGTCGTATTCAAGTGCCGGTCTCAAAGAATACTGTTCTGGATCCTGAAGAAGGTAGGGAAGCCCTTGATAGAGCTTTGCGTAACGGGTTTGGTGTGCGGTATAAGGTTGACGGTCCTCCTTGCGGAAACTGCTTAGACTCTGGAGGATCCTGTGGGTCATATGATACGTCTCAATTTACCTGTCATTGCGTGGATGGACCTCATGCTGCTGACTGTTCTTATTCTGGTTCCAAAGGTCGTCCTTGCGAACAATGCACAGAGTCTGGAGGAGTGTGTGGGTACAATGATGAGTCTCAAATTACCTGTCACTGTGTGGGTCCTCATGCTGCTTACTGTTCTGATTCTGATTCCAGTTTCACAGGCGGAGCAGCTGGAACATTGCTAATTTGTATTACTATTTTCTGTTGTACAATGAAATCATTGAGACAGAAAATAGGATTTTGTAAGACAAGTAAGGCTGACCAAGAAATCGAGGCCTACATTAGAAACCATGGACCTCTGGCTCTCACAAGATATAAATTTGCGGATATCAAGAAAATGACCAAATCTTTTGAAGTTAAACTGGGACAAGGTGGGTACGGTACTGTATACAAAGGACAGCTACTCAATGGATGTACAGTGGCTGTAAAGATATTGAATCCATCCAAAGGGAATGGGGAAGAATTTATCAACGAGGTTGCCAGCATCAGTAGAACTTCCCATGTCAATGTTGTCACGCTTCTTGGATTTTGTTTGGAAGGCAGAAAAAAGGCTCTCATATATGAATTCATGCCCAATGGATCCCTTGAAAGTTTCATTTCCAACAAAGCAAATAAAAATACTTCATCCTTGAGTTGGGAAAATTTGTACCAAATTGCGATTGGGACAGCTCGAGGGCTTGAATACTTGCATAAAGGATGCAACACTCGAATTTTGCATTTTGACATAAAACCACATAACATCCTTTTGGATGAAAGCTTTTGCCCCAAGATCTCAGATTTTGGGCTTGCTAAGCTTTGTCCTACGAAAGAAAGCATTATTTCAATTTCGGAAGCTAGAGGGACTATAGGATATCTTGCTCCAGAAGTCTGGAATAGACATATTGGAGGAGTTTCACATAAGTCTGATGTTTATAGCTATGGAATGATGCTGTTAGACATGGCTGGGGGGCGAAAGAACATGAATATCGAAACCAATTGCATGACTGAGATTTATTTTCCGGATTGGATTTATGATAAACTTGAACAAGGCAATGATTTGGGATGCGATGGGGCCATGACAATGGAGGAAAATGATATTGCAAAGCGAATGACCATTGTAGGTTTGTGGTGCATTCAAACATTTCCAACTCAAAGACCTACAATAAGTAGAGTGATTGAGATGTTAGAGGGAAGCCTAGATTCACTGGAGATGCCACCAAAGCCTGCCATGTCTTCCCCTGCAAGATTAGAATCAGAATTAGAATCTTCCATTACTATCTCTGCCACTACATATTAG 2007 0.4225 MEAHLLFPTTVITISFFLIMMPESHCQEDELYLACQHSFSCGTLQDISYPFWSDNGRRYCGRDGFQLHCVKNQPPSIRVGSQNFSILRIDQYSYTMTMVRTDPVLDLCSSNLTSTSLNTQLNLFHYGRDVKNVSLFYDCPSDILIGRNFTCKNLPNKLVFYEEDTQLQQFSELYNCKRRIQVPVSKNTVLDPEEGREALDRALRNGFGVRYKVDGPPCGNCLDSGGSCGSYDTSQFTCHCVDGPHAADCSYSGSKGRPCEQCTESGGVCGYNDESQITCHCVGPHAAYCSDSDSSFTGGAAGTLLICITIFCCTMKSLRQKIGFCKTSKADQEIEAYIRNHGPLALTRYKFADIKKMTKSFEVKLGQGGYGTVYKGQLLNGCTVAVKILNPSKGNGEEFINEVASISRTSHVNVVTLLGFCLEGRKKALIYEFMPNGSLESFISNKANKNTSSLSWENLYQIAIGTARGLEYLHKGCNTRILHFDIKPHNILLDESFCPKISDFGLAKLCPTKESIISISEARGTIGYLAPEVWNRHIGGVSHKSDVYSYGMMLLDMAGGRKNMNIETNCMTEIYFPDWIYDKLEQGNDLGCDGAMTMEENDIAKRMTIVGLWCIQTFPTQRPTISRVIEMLEGSLDSLEMPPKPAMSSPARLESELESSITISATTY 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1403 668 Pfam Wall-associated receptor kinase galacturonan-binding 35 99 IPR025287 GO:0030247
Dere01g1403 668 Pfam Wall-associated receptor kinase C-terminal 164 243 IPR032872 -
Dere01g1403 668 PANTHER RUST RESISTANCE KINASE LR10-RELATED 331 649 IPR045874 GO:0004672
Dere01g1403 668 MobiDBLite consensus disorder prediction 653 668 - -
Dere01g1403 668 Gene3D Phosphorylase Kinase; domain 1 322 433 - -
Dere01g1403 668 SMART serkin_6 359 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1403 668 FunFam serine/threonine-protein kinase PBS1-like 323 433 - -
Dere01g1403 668 ProSitePatterns Protein kinases ATP-binding region signature. 365 387 IPR017441 GO:0005524
Dere01g1403 668 MobiDBLite consensus disorder prediction 640 668 - -
Dere01g1403 668 SUPERFAMILY Protein kinase-like (PK-like) 344 633 IPR011009 -
Dere01g1403 668 CDD STKc_IRAK 365 634 - -
Dere01g1403 668 Gene3D Transferase(Phosphotransferase) domain 1 434 642 - -
Dere01g1403 668 Pfam Protein kinase domain 362 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1403 668 ProSiteProfiles Protein kinase domain profile. 359 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1403 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 481 493 IPR008271 GO:0004672|GO:0006468
Dere01g1403 668 FunFam PR5-like receptor kinase 434 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1403 Dere-ChrDere01 27164568 27168400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1403 32 667 Receptor kinase-like Gene Family AT1G66910 41.441 3.03e-150 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Dere01g1403 Pkinase 1.3e-43 CL0016