Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1386 ATGCCTGTTGTAACAGACGCATCAGCAATTTCAGAACACATAAAATGTAGAAGACCCAGAAGCCATTTTGGTCATATCCTTCCAGAAGCTGATCCAAACCCACCAATCCCTTCTATAATCCAATCCACTCGCTGCAAATCCACCATTTCATCTCTCCTCCTCTCTACTTTCTCGAACAACGCGTCGAATGAAACTATACAGGGCAACAACATCAACGTCAACGGCAGGGGCCATAACAAGAAGAAGAAGAACAATTTCTCGGCTGCTGCAACCTTCAAAGGACTCGGATGCACCGCCGGTGTCTCGCAGCAGGTGTCGGTTCCCGCGGTGATTCGGACATCGGCGGATTGGCAAGGGAAGAAGACCAGAAAGAAGAAGCACAAAAGGAATACCACCAAGACCTGTCCTGGCGTTCTTGATGGTTCTGGCTCTGGTTCTGCCAATTCTGTTGATTTTCAAGACGTTTGGTGTGGCCCCGGAATTGGATTTTCAGCAGATGCTGCTGCGTCTGTTGATTGCGTTGTGGCCAGGAAGAATGTGTCTGCTAGAGGGAAGATTGATGTGGAGAGGTTAATCCACAGGGAGCGTGCGCCTTATCTTGGAAGGCGAACTGCAAACCCAGAAACCATCTCGTTTCTGGATAGCGATCCTGATATCTTCCCAACACGCCCTGCCTCTGACTCTTATGGGACTGCAAGATACTATCGTCATGTTCGACATCCTTCCTCTGAAGGTTTTGCTGAGATAATGATGCTTCAAGGAGGTCTGCTAATGGGGGGAATATTAGATTCATATGACCAATTTAGAGACATGAGACTTGATGTCGATAGCATGTCATATGAGCAACTGCTTGAGCTTAGTGAGACGATTGGTTATGTGAACACTGGTCTCAAAGAAGATGAAATAGGACGCCATATAAGGAAAATTCAGCTTCCATATTTGAATGAAACCTTGAAGCAACATATTAACAAGAAGTGCAGCATTTGTCAGGAGGAATACGAGGGAGATGATGAGCTGGGAAAGCTAACTTGTCAACATAGCTATCACTTTCAGTGTATCAGACAATGGCTTACGCACAAAAATTTCTGCCCAGTCTGTAAGCAAGAAGTTGTGGAACGTCAGTGA 1125 0.4604 MPVVTDASAISEHIKCRRPRSHFGHILPEADPNPPIPSIIQSTRCKSTISSLLLSTFSNNASNETIQGNNINVNGRGHNKKKKNNFSAAATFKGLGCTAGVSQQVSVPAVIRTSADWQGKKTRKKKHKRNTTKTCPGVLDGSGSGSANSVDFQDVWCGPGIGFSADAAASVDCVVARKNVSARGKIDVERLIHRERAPYLGRRTANPETISFLDSDPDIFPTRPASDSYGTARYYRHVRHPSSEGFAEIMMLQGGLLMGGILDSYDQFRDMRLDVDSMSYEQLLELSETIGYVNTGLKEDEIGRHIRKIQLPYLNETLKQHINKKCSICQEEYEGDDELGKLTCQHSYHFQCIRQWLTHKNFCPVCKQEVVERQ 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1386 374 SMART ring_2 326 366 IPR001841 -
Dere01g1386 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 374 IPR013083 -
Dere01g1386 374 ProSiteProfiles Zinc finger RING-type profile. 326 367 IPR001841 -
Dere01g1386 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 62 370 IPR045191 GO:0061630
Dere01g1386 374 Pfam Ring finger domain 325 367 IPR001841 -
Dere01g1386 374 MobiDBLite consensus disorder prediction 116 139 - -
Dere01g1386 374 SUPERFAMILY RING/U-box 325 372 - -
Dere01g1386 374 FunFam E3 ubiquitin-protein ligase rnf12-A 293 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1386 Dere-ChrDere01 26968032 26972157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1386 2 281 C3H Transcription Factor Family AT1G73760 39.073 6.15e-51 170