Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1362 ATGTCTGACATGGATCCGTCTAGGAAAGTGGCCGATAGATATCTCAGGCGTGAAGTCCTCGGTGAAGGTACCTATGGAGTCGTTTACAAAGCCATTGATACCAAGACAGGACAGACAGTTGCAATTAAAAAAATTCGGCTTGGCAGGCAGAAGGAAGGGGTTAATTTTACGGCTCTTAGAGAGATTAAACTGCTTAAAGAGCTCAAGAGTCCCAATATTATAGAGTTAATTGATGCATTCCCGCATAAAGGGAATTTGCATCTTGTGTTTGAATTTATGGAGACGGACCTTGAAGCTGTTATACGAGACCGAAATATTTTCCTTTCACCAGCTGATATAAAATCTTACCTTCAAATGACACTTGAAGGTCTTGCTTATTGCCACAAGAAATGGGTTTTGCGTAGGGATATGAAGCCAAATAACTTGTTGATAGGACCTAACGGACAGCTGAAACTTGCAGATTTTGGTTTAGCAAGGATATTTGGGAGCCCAGATCGAAGGTTTACTCATCAGGTGTTGGCTCGGTGGTATAGAGCACCTGAGCTATTATTTGGGACCAAACAGTATGGTTCAGGGGTTGATGTTTGGGCTGCGGGTTGTATATTTGCTGAACTCCTGCTTCGCCAGCCCTTTTTGCAGGGTTCAAGTGATATTGACCAATTAGGAAAGATTTTTGCTGCATTTGGGACTCCAACACCTTCTCAGTGGCCTGATATTGTGTATCTTCCTGATTATGTTGAATACCAATATGTTCCAGCTCCCCCTTTGAGATCTTTATTTCCAATGGCAAGCGATGATGCTTTAGATTTGTTGTCAAATATGTTTACATATGATCCCAAAGTTAGGATTTCAGTGCAACAGGCATTAGAGCACAGGTATTTTTCATTCGTGCCTCTGCCTACAGATCCTGATAAGCTCCCTACACCTGCCCCTAAGAGGGAACTTAAGGTTTCTGATCTCAATCCACATGAGGGCCCTACTGTGTTATCACCTCCTAGAAAGTCTAGGAGAGTGATGCCAGGGCGTGATGGATTTGATGCAAATGCATTATTAGGAGATAAGATTGATAACAATGTTAGTGATTACGGACAGAAGGTTGGTGATAATACAGGCAAGAATGATCCCACGCCAGCATCAATAGACTTTTCTATATTTGGACTAAAACCTCCAAATAGACCTACTATTAACAGTGCTGATAGATCACATCTGAAAAGAAAATTAGATCTAGACTTCCAACAGCCAGAATGA 1248 0.4175 MSDMDPSRKVADRYLRREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGRQKEGVNFTALREIKLLKELKSPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLEGLAYCHKKWVLRRDMKPNNLLIGPNGQLKLADFGLARIFGSPDRRFTHQVLARWYRAPELLFGTKQYGSGVDVWAAGCIFAELLLRQPFLQGSSDIDQLGKIFAAFGTPTPSQWPDIVYLPDYVEYQYVPAPPLRSLFPMASDDALDLLSNMFTYDPKVRISVQQALEHRYFSFVPLPTDPDKLPTPAPKRELKVSDLNPHEGPTVLSPPRKSRRVMPGRDGFDANALLGDKIDNNVSDYGQKVGDNTGKNDPTPASIDFSIFGLKPPNRPTINSADRSHLKRKLDLDFQQPE 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1362 415 MobiDBLite consensus disorder prediction 303 339 - -
Dere01g1362 415 MobiDBLite consensus disorder prediction 362 377 - -
Dere01g1362 415 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Dere01g1362 415 SUPERFAMILY Protein kinase-like (PK-like) 9 301 IPR011009 -
Dere01g1362 415 PANTHER CELL DIVISION PROTEIN KINASE 12 300 - -
Dere01g1362 415 MobiDBLite consensus disorder prediction 398 415 - -
Dere01g1362 415 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1362 415 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Dere01g1362 415 Gene3D Phosphorylase Kinase; domain 1 10 94 - -
Dere01g1362 415 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1362 415 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Dere01g1362 415 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1362 415 MobiDBLite consensus disorder prediction 356 415 - -
Dere01g1362 415 FunFam Cyclin-dependent kinase D-1 5 94 - -
Dere01g1362 415 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1362 Dere-ChrDere01 26522839 26527083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1362 8 412 Core Cell Cycle Gene Families AT1G18040 73.086 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Dere01g1362 Pkinase 9.8e-71 CL0016