Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1351 ATGTCATACGTGGATACTTTGTTGGATTCGCAGTTGCCCGAGGAGAAGTGCAAGCTTGACGAAGATGAATTCGCAACCGGAAGTACCCACATATCCAGTAAAGAGGAAATAAGAGATGTGATGGGTGAGAGAGAGGAAGAGGAAGAGGAAGTGAAAGAGAAAGACCTGAACAAATTGCCATATCTTAAAGCTGTGATTCTTGAAGGATTAAGGCGTCACCCACACGGGCATTTTGTGTCGCCGCATGCAGTATCAGAGAATGTGGGCTATAAAGCATTTACAGGGAAAACATTGCTACACCATCTCTCTCCTTCTCTCCTTCTCTACTTCAACTGTCGCTACGCCTCTGAAAACCCTAGTTTCAGCTTCGTAGCTTCTCCTTTGCACGGCACAATGAGTCCCCGTGCCGACGAATGCGAGGAAGATGAGCTCTCCGCCAGCGAAGACGATGACGGCTTCAAGGAGGACATGGACGCCCTTGTACGAGCATGCAGGATCGCCGGTACTAACCCCGATGATTTTATAAACCCCTCCACCGCCGCACCTGACCGTGAGCATGCAGACGCAGTGGCTCCGAACGCGCAGGACCCGCTTGTGGGCTCCGGCGATTCTCTCGTGCCCGCGACCGACTCGGACGACGAGCAGAGTGACATTCAGTATCTCAAAAGAGTACAGGACCTCTATCAGCCTTTGTCTCTCAAGCCTTTAAAAACTCTGCCCGCGCCTACTTTGTCCGATGACGACGAAGATGATTTGGAAACCCTCCGTGCCATTCTGAAACGCTTTTCCACCTATGATAAAGGCCCTCATGAAGATAGTGTGGATAAAATGGCTGAGGGAGCTCATGGCTCAACTCTTGGATGTCAGGAGGAAATTGCTAACAGCGTGACATCTAAGGAATCAGATCCCTGTGAATCATGTCCTATTTTTCAGGGAGATATTAAGACCACCAATTTATTGATTGGTAATGTTGAGAGGCAGCCTTGTAATTTTGAAGGTTATAAACCAGATGCTTGCACGCCATCCAAGTTACCAGACAAAAGATCAAAATTTCCATTGTCTGCTCAGGTGTTTATTGATGCCATCAAGAAGAATCGATCTTTCCAGAAGTTACTTAGAAGTAAGTTGATTCAGATGGAAGCAAAAATTGAGGAAAACAAGCGGTTAAGAGAAAGAGTTAAACTTCTTAAAGATTTCCAGGTTTCATGCATAAGAAGAACAGGGCAAGCTTTATCACAGAAAAAGGATTCCCGTGTTCAGTTAATATCAACAAAAAAGTCTCCTGCTTCGAATAACTCAAAGATTAATGATAAAAAAATATCTGCAATGTGTTATGGCCCAGCTGAGAATGCTCATGTTATTAGTTATAAAATGGTTTTGGAAAGATTTCCGCTCTCATTGGATCGGAAAAAATGGTCATGTGTGGAGAGGGAGAATCTTGGCAAGGGAATAAAGCAACAATTCCAAGAAATGGTGCTTCAAATTTCTGTAAATCAAGTCAGTTCAGAGTGTTCGATTGGAGATGCAAATGACTTTGATAGCATACTTGCATCTATTAAGGATCTTGAAATTACACCAGAGAACATTAGGAAATTTCTGCCTAAAGTCGATTGGGATCGGTTGGCTTCCATGTATGTTGTTGGGCGTACTGGTGCAGAATGTGAAGCAAGGTGGTTAAATTGTGAGGATCCCATGATCAATCATAGCCCATGGACTTGTGAAGAGGACAAGTTTCTCTTGCATGCAGTCGGAGAGATTTGCAGTAGGAACTGGTTTGAAATTGCTGCATTGCTAAACACAAACAGGACCCCATTTCAATGCTTGGCACGATATCAGAGGAGTTTAAATCCTTCCATGCTAAATAGTGAATGGACCGAGGAAGAAGATGCTCAACTTTGTTCTGCTGTAGCAGTTTTTGGTGCGAGCAATTGGCAATCTGTAGCTTCTGTTTTAGAACGACGGACTGGAACCCAATGCTCTAATAGATGGAAAAAGTCCCTCTGTCCTGAGAGGAAAGGGGGCTTCACTCCAGAAGAGGATGAGCGCTTAACAGTAGCTGTCCATCTCTTTGGACGGAAATGGAATCAAATAGCTAAATTTGTTTCCGGCCGGACCCAAGCTCAGTGCAGAGACAGATATGTCAATAGTCTGGATCCTTCTTTGAAATGGGGTGGATGGACAAAGGAAGAGGATTCAAGATTGAAAGCAGCAATTGCCAAACATGGATTCTGCTGGTCAAAGGTTGCCGAAGATGTGCCTCCACGGACTGATGGTCAATGCCGGAAGAGATGGAGGGTTCTATGTCCTGACCAGGTTCCTTTGCTCCAAGCTGCTAGAAAGATGAAAAAGGCAGCTCGTATCAGTAATTTTGTTGATCGAGAGTCAGAACGTCCTTGCCTTTCTCTTAATGATTTTCTTCCCTTAGCAATGTTAGGTCCACCATCTGATGCAGATGCTGTGAGCCACCCACGGAAACGGAAGAGCAAGTCAAGCAATGTTTCCAAGAAAATGAGGCCCAAGAAACATGCAAAAAAGGCTCAAATTGATCATGATGAGGTCGAGGCTTGTGGTGGACATGATGTCCAGCAGCCAGAGATTACTGAACCACAGTGGGGGAACAATTCTGTTGAAGCATTGTATGACCATTCCCCATTGGACTCAGTTTTGACGACAACCAATGGCAAAAGGGATTTAAGTGGACATAATAAAAAAAATAAGTTAATTGATTCAAAACCAGTACGAGAGGGCTGTGCTGAATTACACGAAGACAACCATACTCATGGAACACCTTGTGAGAATATATCTGATGGTAAGGTTGTAGGTAGCAACGTTACAAGAAATACTATTTGGAAGAAGGGAAGAAAGAAGATAGGGACACAGAACGGAATAATTAGAGGTGCTGAAACAGCCAGCCCAGTCAAGAATAAAATGTCAAGACCTGGAAGCATATCTTCTGTGCTGATTTTAGAAAGTCAGGATGAAGACAATATAACTCTAGCTTGCTTTTTACACAATCGATCAAAGAGACAGTCTAAAAATATCAAACAAGGGACCCAGGCCACCTTTCCCTCTACGACTAGTAGTTCTGATTCACCAAGGATGCACCACGTTGAAAATCAAATTCCATCTGTTGTGCAAGATGGTTTGTCTCAGACATACGGTGCTGATACTGAGATCTGCCTAATCAGGACCGTCAATGCCAATGAAGCTAAGGGAATAGATCAGGTCATTCATGAGGACATTGCTGCTCAAGGAGAAGCGAGAAACTCACAGGATGTAAGAATGTTTACTGATCATGATGATGATGATATGACTCTTGCTTGCCTTATGGGAAATAAATTACAGAAATCTAGTCAAGCTGCCAAACGATCTCGAGCTTGCATTTCCTCCAGTTTGAACAAGGGATCTGTGTTGCTTCCTGAAGAAGTGCATAAATGTCACGACCGAAACCAAGAAATGTCAGATGTGCAAGACCCAGAGTTAGATGGAGGATGTAATGATGTTACACCTGGAACTTTATTGGCCCGAAATCATTCTTGCATTTTGAAGAATATGTCAACCATCGAAGCTGATGACATGTCAAAACCAGTTGAAGAGCAGACTATTGTTTTGGATGGTGTGACGGAACCCAAAAACATCAATATTGATGAAGATGAGTCTACTGATATTTCCCTTGCTTCCTTCCGGAGAAAGAAGGGAAGGAGACAGAGGAGAGCAGCCAATGGCGTTCTTCCCTCATGA 3741 0.4381 MSYVDTLLDSQLPEEKCKLDEDEFATGSTHISSKEEIRDVMGEREEEEEEVKEKDLNKLPYLKAVILEGLRRHPHGHFVSPHAVSENVGYKAFTGKTLLHHLSPSLLLYFNCRYASENPSFSFVASPLHGTMSPRADECEEDELSASEDDDGFKEDMDALVRACRIAGTNPDDFINPSTAAPDREHADAVAPNAQDPLVGSGDSLVPATDSDDEQSDIQYLKRVQDLYQPLSLKPLKTLPAPTLSDDDEDDLETLRAILKRFSTYDKGPHEDSVDKMAEGAHGSTLGCQEEIANSVTSKESDPCESCPIFQGDIKTTNLLIGNVERQPCNFEGYKPDACTPSKLPDKRSKFPLSAQVFIDAIKKNRSFQKLLRSKLIQMEAKIEENKRLRERVKLLKDFQVSCIRRTGQALSQKKDSRVQLISTKKSPASNNSKINDKKISAMCYGPAENAHVISYKMVLERFPLSLDRKKWSCVERENLGKGIKQQFQEMVLQISVNQVSSECSIGDANDFDSILASIKDLEITPENIRKFLPKVDWDRLASMYVVGRTGAECEARWLNCEDPMINHSPWTCEEDKFLLHAVGEICSRNWFEIAALLNTNRTPFQCLARYQRSLNPSMLNSEWTEEEDAQLCSAVAVFGASNWQSVASVLERRTGTQCSNRWKKSLCPERKGGFTPEEDERLTVAVHLFGRKWNQIAKFVSGRTQAQCRDRYVNSLDPSLKWGGWTKEEDSRLKAAIAKHGFCWSKVAEDVPPRTDGQCRKRWRVLCPDQVPLLQAARKMKKAARISNFVDRESERPCLSLNDFLPLAMLGPPSDADAVSHPRKRKSKSSNVSKKMRPKKHAKKAQIDHDEVEACGGHDVQQPEITEPQWGNNSVEALYDHSPLDSVLTTTNGKRDLSGHNKKNKLIDSKPVREGCAELHEDNHTHGTPCENISDGKVVGSNVTRNTIWKKGRKKIGTQNGIIRGAETASPVKNKMSRPGSISSVLILESQDEDNITLACFLHNRSKRQSKNIKQGTQATFPSTTSSSDSPRMHHVENQIPSVVQDGLSQTYGADTEICLIRTVNANEAKGIDQVIHEDIAAQGEARNSQDVRMFTDHDDDDMTLACLMGNKLQKSSQAAKRSRACISSSLNKGSVLLPEEVHKCHDRNQEMSDVQDPELDGGCNDVTPGTLLARNHSCILKNMSTIEADDMSKPVEEQTIVLDGVTEPKNINIDEDESTDISLASFRRKKGRRQRRAANGVLPS 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1351 1246 Gene3D - 621 670 - -
Dere01g1351 1246 CDD SANT 675 717 IPR001005 -
Dere01g1351 1246 CDD SANT 726 767 IPR001005 -
Dere01g1351 1246 ProSiteProfiles Myb-like domain profile. 718 768 IPR001005 -
Dere01g1351 1246 Coils Coil 37 57 - -
Dere01g1351 1246 MobiDBLite consensus disorder prediction 193 216 - -
Dere01g1351 1246 SUPERFAMILY Homeodomain-like 697 771 IPR009057 -
Dere01g1351 1246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 563 615 IPR017930 -
Dere01g1351 1246 MobiDBLite consensus disorder prediction 815 849 - -
Dere01g1351 1246 Gene3D - 569 619 - -
Dere01g1351 1246 ProSiteProfiles SANT domain profile. 670 715 IPR017884 -
Dere01g1351 1246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 718 772 IPR017930 -
Dere01g1351 1246 SUPERFAMILY Cytochrome P450 35 90 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Dere01g1351 1246 CDD SANT 623 667 IPR001005 -
Dere01g1351 1246 MobiDBLite consensus disorder prediction 1010 1033 - -
Dere01g1351 1246 Pfam Cytochrome P450 34 88 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Dere01g1351 1246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 616 671 IPR017930 -
Dere01g1351 1246 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 145 1228 - -
Dere01g1351 1246 SUPERFAMILY Homeodomain-like 619 713 IPR009057 -
Dere01g1351 1246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 672 712 IPR017930 -
Dere01g1351 1246 MobiDBLite consensus disorder prediction 826 843 - -
Dere01g1351 1246 SMART sant 722 770 IPR001005 -
Dere01g1351 1246 SMART sant 468 564 IPR001005 -
Dere01g1351 1246 SMART sant 671 719 IPR001005 -
Dere01g1351 1246 SMART sant 567 617 IPR001005 -
Dere01g1351 1246 SMART sant 620 669 IPR001005 -
Dere01g1351 1246 ProSiteProfiles Myb-like domain profile. 671 717 IPR001005 -
Dere01g1351 1246 ProSiteProfiles Myb-like domain profile. 563 615 IPR001005 -
Dere01g1351 1246 Pfam Myb-like DNA-binding domain 675 734 - -
Dere01g1351 1246 Pfam Myb-like DNA-binding domain 571 632 - -
Dere01g1351 1246 SUPERFAMILY Homeodomain-like 545 613 IPR009057 -
Dere01g1351 1246 ProSiteProfiles Myb-like domain profile. 616 667 IPR001005 -
Dere01g1351 1246 Gene3D Cytochrome P450 34 100 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Dere01g1351 1246 MobiDBLite consensus disorder prediction 24 50 - -
Dere01g1351 1246 Gene3D - 671 722 - -
Dere01g1351 1246 Gene3D - 723 770 - -
Dere01g1351 1246 Coils Coil 372 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1351 Dere-ChrDere01 26347834 26357265 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1351 344 844 MYB-Related Transcription Factor Family AT3G18100 51.663 2.48e-171 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere01g1351 Myb_DNA-bind_6 6e-13 CL0123