Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1346 ATGAGAAAACCTTCCTGTGTTAAGCAAGAAACTCAGAAAAGATCATCGTGGTCCAAGGAAGAGGACCAGAAGCTTATTGATTACATACAAAAACATGGTGAAGGTTGCTGGCGTTCAATTCCTCAGGTTGCAGGGTTACGTCGCTGTGGCAAAAGCTGTCGGTTGAGATGGTTAAACTATCTGAAGCCTGACCTTAAAAGGGGAGACTTTGGAGAAGACGAAGAGGACTTGATCATCAGGCTTCATGCTCTTCTTGGCAACAGGTGGTCACTGATAGCAGGAAGGCTACCAGGAAGAACAGATAATGAGGTGAAGAATTACTGGAACTCCCACATAAGGAAGAAGCTAATTCAGAAGGGTCGAGATCCCAATAATCTTCATCGCTTTAAAGGCTCCATAGTTGGAACTGGTGAATCGTTGGATCCTAATAGTAATATGGATGATGATGATGAGACTTCCAAGCAAGTGAATTTGCAGGCTAATGTTGACGACAACGATCAGGTGTGTGATTCATCGAGCAGGTCAAAGTGCAACCTGAACGGTTTTCCTGACTTGAATCTTGATCTTACTCTCACTACTAACTTCTCCGGGGAGAGTAAGATTCAGTGA 609 0.4384 MRKPSCVKQETQKRSSWSKEEDQKLIDYIQKHGEGCWRSIPQVAGLRRCGKSCRLRWLNYLKPDLKRGDFGEDEEDLIIRLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRKKLIQKGRDPNNLHRFKGSIVGTGESLDPNSNMDDDDETSKQVNLQANVDDNDQVCDSSSRSKCNLNGFPDLNLDLTLTTNFSGESKIQ 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1346 202 CDD SANT 72 112 IPR001005 -
Dere01g1346 202 MobiDBLite consensus disorder prediction 132 152 - -
Dere01g1346 202 CDD SANT 16 61 IPR001005 -
Dere01g1346 202 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 159 - -
Dere01g1346 202 FunFam MYB transcription factor 68 129 - -
Dere01g1346 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dere01g1346 202 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Dere01g1346 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dere01g1346 202 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dere01g1346 202 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Dere01g1346 202 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere01g1346 202 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dere01g1346 202 SMART sant 66 114 IPR001005 -
Dere01g1346 202 SMART sant 13 63 IPR001005 -
Dere01g1346 202 FunFam MYB-related transcription factor 13 66 - -
Dere01g1346 202 Gene3D - 68 131 - -
Dere01g1346 202 Gene3D - 15 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1346 Dere-ChrDere01 26301371 26303081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1346 2 192 MYB Transcription Factor Family AT4G38620 50.244 2.94e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere01g1346 Myb_DNA-binding 1.4e-17 CL0123