Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1339 ATGAAGTCCACGTCAGACATTGCACTATCCCCAATTCCACCACCGCTTTATTTTCAATTCCTCCTTTTCCCAAAAACCACCAAACCTAACCCTTCTCTCTCTCTCGCCCTTTCTCTCTCAGTAATAACTCTCTTTTTCTCTCCACCATTAAATCTATTTTCGATTTTTCTGAATCTACCCCTTACTCCCATGGACCCGTCCTCGATCCCTCCTCCTCCGGCCACCATCCCTGCTCCCATCTCTTTCTTCCCCGCCGAACCTACAACCAACAACAACCATGTCCCTCCTCTGGCCACCAGCGCCGCCGCAAATCCAACTCCTCTTCCTTCTTCTGTTCCGGGTTTTGCTCCAGCTCAAGCTCAAGCTCAAGCTCAAGGACCAGCTCCGAATCACCCTCCTTACTCTGAGATGATATATGCAGCAATCGAGGCGCTGAAGGAGAAAAATGGGTCCAGCAAGAGAGCTATCGGCAAGTACATAGAGCAAGCGTATCGTGACCTTCCACCGAATCACTCTACCATGTTGACTCACCACCTTCAGCGCTTGAAGAACAATGGACTCCTCGTTATGGTCAAGAAATCTTACAAGCTTCCCAGATCTGATGGTTCTCCGTCTACTCCCCAAAGAGGACGTGGCAGACCCCCTAAGCTCAAGCCACAGCCACTGACTCAGGCTCAGGCTCAGGCCGAGCCGCAGCTCGAGCCCGTGCCCAACGCGCCACAGAATCTGCAAAATGCTGAGCCCGTGTGGGTTGCGCTTGGGCTTGCTGATGAGCCCGCGGAGGTGAAGAAAAGAGGCCCAGGCCGTCCTCGGAAGACCATGGTAGTCGAGGGAGTGGGCCTACCTGGGCCAGTCGTGCGGAGAGGCCGTCCACCGGGAACCGGGAGATCTAGGTTGCCGAAGAGGCCCGGGCGTCCTCCCAAGCCTAAATCTGTGTTGACAATGTCTAATGGGCTGAAGCGGCGACCCGGTCGCCCGCCCAAACTCCAATCTAAGCTGATGGTCATTCCCTTCGAAGCCCCGGCTTCCACAGGGGCCGCCGTCCCCACTGTACCGACTACACAGGGAGCTGCACCGGATGGTACCTTACAAATTGTGACTCCGAGGCGTAGGGGACGGCCAAAGAAGTATGCTTCAGCTCTGGGAGCTCCGTCTCATGCTTTTGTTGGCCGTGGCCGTGGCCGTGGACGAGGACGTGGGCGCGGTGTCTTCCGAAGCTCCACTGGAAGACCCGTTGGCCGGCCAAAGAAGGGAACAACTTTTGATCCTACTGCACAAAAGATTGTTAGTGAAGATCTCAAGAGGAAACTTGAATATTTTCAATCCAAAGTAAAGGAATCTCTTAGTGTGATTAAGCCTCATTTTAACCATGAAAGCCCAGTCACTGCAATTGCAGCAATCCAAGATCTAGAGATACTGGCAACTATGGACCTTAATGCCCCATTGAATGATGAAACACAGCAACTGCAGCAGTTTCCTCAGCCACAAGTGCAGCCACAGCCGCAGCCTCACCAGCAGCAACAGCCAGATTTTCATCCACAGCAAATGCCACAGCCGCAGATGTTTCATCAACCATTGCCACAGCCGCATATGTTTCAGCAGCCATTTTCACAGCCACAGATTTTTCAACAGCAAATGCCTCAGCCTCAGATGTTTCAACAGCAATTGCCACATGTTCCATTGCAGTCACAGCAGCAGCAATTGTTTCAGCCACATGCATGA 1722 0.529 MKSTSDIALSPIPPPLYFQFLLFPKTTKPNPSLSLALSLSVITLFFSPPLNLFSIFLNLPLTPMDPSSIPPPPATIPAPISFFPAEPTTNNNHVPPLATSAAANPTPLPSSVPGFAPAQAQAQAQGPAPNHPPYSEMIYAAIEALKEKNGSSKRAIGKYIEQAYRDLPPNHSTMLTHHLQRLKNNGLLVMVKKSYKLPRSDGSPSTPQRGRGRPPKLKPQPLTQAQAQAEPQLEPVPNAPQNLQNAEPVWVALGLADEPAEVKKRGPGRPRKTMVVEGVGLPGPVVRRGRPPGTGRSRLPKRPGRPPKPKSVLTMSNGLKRRPGRPPKLQSKLMVIPFEAPASTGAAVPTVPTTQGAAPDGTLQIVTPRRRGRPKKYASALGAPSHAFVGRGRGRGRGRGRGVFRSSTGRPVGRPKKGTTFDPTAQKIVSEDLKRKLEYFQSKVKESLSVIKPHFNHESPVTAIAAIQDLEILATMDLNAPLNDETQQLQQFPQPQVQPQPQPHQQQQPDFHPQQMPQPQMFHQPLPQPHMFQQPFSQPQIFQQQMPQPQMFQQQLPHVPLQSQQQQLFQPHA 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1339 573 MobiDBLite consensus disorder prediction 503 521 - -
Dere01g1339 573 SMART h15plus2 128 194 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere01g1339 573 MobiDBLite consensus disorder prediction 491 573 - -
Dere01g1339 573 MobiDBLite consensus disorder prediction 530 573 - -
Dere01g1339 573 MobiDBLite consensus disorder prediction 195 230 - -
Dere01g1339 573 MobiDBLite consensus disorder prediction 386 423 - -
Dere01g1339 573 Gene3D - 127 209 IPR036388 -
Dere01g1339 573 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 130 199 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere01g1339 573 CDD H15 131 207 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere01g1339 573 Pfam linker histone H1 and H5 family 131 193 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere01g1339 573 FunFam Histone H1.2 127 207 - -
Dere01g1339 573 SMART AT_hook_2 368 380 IPR017956 GO:0003677
Dere01g1339 573 SMART AT_hook_2 409 421 IPR017956 GO:0003677
Dere01g1339 573 SMART AT_hook_2 394 406 IPR017956 GO:0003677
Dere01g1339 573 SMART AT_hook_2 320 332 IPR017956 GO:0003677
Dere01g1339 573 SMART AT_hook_2 208 220 IPR017956 GO:0003677
Dere01g1339 573 SMART AT_hook_2 264 276 IPR017956 GO:0003677
Dere01g1339 573 SMART AT_hook_2 285 297 IPR017956 GO:0003677
Dere01g1339 573 SUPERFAMILY "Winged helix" DNA-binding domain 128 200 IPR036390 -
Dere01g1339 573 PANTHER HISTONE H1 104 328 - -
Dere01g1339 573 PRINTS AT-hook-like domain signature 366 377 IPR017956 GO:0003677
Dere01g1339 573 PRINTS AT-hook-like domain signature 208 218 IPR017956 GO:0003677
Dere01g1339 573 PRINTS AT-hook-like domain signature 407 417 IPR017956 GO:0003677
Dere01g1339 573 MobiDBLite consensus disorder prediction 261 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1339 Dere-ChrDere01 26150049 26153350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1339 137 212 Single Myb Histone (SMH) Gene Family AT1G49950 39.474 3.71e-07 50.4