Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1308 ATGACAAGGCTAGACCAGTCAGGCACAAGTAAAAGCTTAGAGAGCTTATTGGGCATAAACAATACAGGAACCACAAAAAATGTTGTGAAGCAAGTGAGACCCCAGAGGTCCATCCCTGAGAATGGCCTAGAATTCAATAACATATCATATAAAGTCAAGAAGAAGCAGAAAAAGGATGGGGTTTGGATCAAGAAAGAAGCTTATCTTCTTCATGACATCTCTGGGCACGCAGTTAGAGGAGAAATCATGGCGATCATGGGGCCAAGTGGGGCTGGCAAATCCACATTTCTTGATGCCTTGGCTGGTCGGATTGCCCAAGGGAGTCTAGAAGGATCAGTTAGAATGAATGGAAAAACTGTAACTACAAGTTATATGAAGATGGTGTCATCGTATGTGATGCAAGATGACCAGCTTTTCCCTATGTTGACAGTTTTTGAGACATTCATGTTTGCAGCAGAGGTTAGGCTTCCTCCTACCGTTTCCCGAATGCAAAAGAAGAAGAGAGTTGATGAGCTCCTTGATCAACTGGGGTTACAGAGTGCAGCACATACATATATTGGCGATGAAGGGATGAGAGGAGTGTCAGGAGGGGAACGACGAAGGGTATCTATTGGCATAGACATCATTCACAAGCCATCACTATTGTTTCTCGACGAACCAACCTCAGGTCTCGATTCTACAAGTGCTTACAATGTAGTGGAAAAGGTTAAGGACATAGCTCGAAGTGGTAGCATCGTCCTCATGACCATACATCAGCCTTCATTCAGAATTCAAAGGCTCCTGGACATGATCACCATCCTGGCAAGGGGAAGACTGATATACATGGGAAGGCCAGATGCGCTTCCTACATACCTTTCAGGATTTGGAAGAATAATACCAGATGGAGAAAACAATATTGAGTGTATGTTGGATGTCATAAAAGAATATGAAGAATCAACAATTGGTATAGACCCCCTTGCTCAATACCAACGTGATGGCCAAAAGCCTGACCAAGCAGCCATGACACCTGTTCCTAAAACACCAAAAACTCCAAAAACGCCTGTCGTAGCTGACACCCCTGCATCAAGACACAGTATTAGCCTACTTAGCCAAGGGTTCACTGGTAGAACACCGAAACCTGACTCTGCCCAATTTGATCGTGATGATGATGATGAGAATTTTGATTACTCGCTTGAGAGGAGAACTGCTCAGACACCAAGGAATATGTCCAGTGGGGGTGTCCCGCGTTTGGCTTCTCAGTTCTACGAAGAGTTCTCAGCCAAGGATTTCTCTGTTTGGATTTACCATGGTGTAGTAGGAACTCCTCGTCGCCCACCATCATGGACTCCGGCAAGAACTCCTGGATGGACACCGGCAAAAACTCCGGTGAGAACTCCAGGTTGGATACCTGCAAAAACACCTTCAGTGCCAGGAAGTAACAACGTTTCTGGCCAATATTCTGCATCTCATCAGGACCCTTATCACGCCAAAACACCGTCTGTGGTTCGCCAATCCATGGACACCTATGTTTCTTCTTATGAAGAGTTTGAGATTGAACAAGATCTAGATGAGCCACACCTCGGATCCAAGTTTGCAAACCCATGGCTTCGCGAGGTTGTTGTACTGTCATGGAGAACTGCACTCAATGTGATTCGCACCCCAGAACTCTTCCTGTCCCGTGAGGTTGTGTTAACTGTTATGGCACTTATCCTTTCCAGCATCTTCAACAACATTGGTCATCGCACTTTCAAGGACATAAATAGACTACTCAACTTCTACATCTTTGCAGTGTGCCTGGTTTTCTTCTCTTCCAATGATGCTGTCCCTGCTTTCATCTTGGAAAGGTTCATCTTCATCAGAGAGACATCCCACAATGCTTACCGTGCTTCTTCTTATGTCATTTCATCCCTCATTGTTTATCTCCCATTTTTCGCCGTTCAAGGCTTTACATTTGCCGCCATAACCAAAGTACTGCTCCACCTGAACTGCAATTTCCTTAAATATTGGATGATCCTCTTTGCCTCGCTTATCACTACCAATGCTTATGTGATGCTAGTTAGTGCACTTGTCCCAAGTTACATCACAGGGTATGCAGTAGTGATAGCCACAACGGCTCTCTTCTTCTTAACTTGTGGTTTCTTTCTCAAGAGAACTCAGATACCCCTTTACTGGAGGTGGCTCCACTATATTTCTGCAATCAAATACCCATTTGAGGCACTGCTGACAAATGAATTCAAGAATGATGAATGCTACACAGGGAGCCCAGCAGATTTGTCCCCTGGCCCTTTAGGACAAGTCAAGCCAAGCTTCCGGCATACAATGTTAAATATCTCGAGTAATTGTTTAATAGGAGAAGATGTTTTGTCCTCAATGGATGTCCGGAAAGAAAACATATGGTATGACATCTTCATATTGCTGGCGTGGGGAGTTCTTTACAGGTTCTTCTTCTATCTGGTTTTGAGATTTTACTCCAAGAATGAGAGAAAATAA 2469 0.4431 MTRLDQSGTSKSLESLLGINNTGTTKNVVKQVRPQRSIPENGLEFNNISYKVKKKQKKDGVWIKKEAYLLHDISGHAVRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRMNGKTVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPTVSRMQKKKRVDELLDQLGLQSAAHTYIGDEGMRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYNVVEKVKDIARSGSIVLMTIHQPSFRIQRLLDMITILARGRLIYMGRPDALPTYLSGFGRIIPDGENNIECMLDVIKEYEESTIGIDPLAQYQRDGQKPDQAAMTPVPKTPKTPKTPVVADTPASRHSISLLSQGFTGRTPKPDSAQFDRDDDDENFDYSLERRTAQTPRNMSSGGVPRLASQFYEEFSAKDFSVWIYHGVVGTPRRPPSWTPARTPGWTPAKTPVRTPGWIPAKTPSVPGSNNVSGQYSASHQDPYHAKTPSVVRQSMDTYVSSYEEFEIEQDLDEPHLGSKFANPWLREVVVLSWRTALNVIRTPELFLSREVVLTVMALILSSIFNNIGHRTFKDINRLLNFYIFAVCLVFFSSNDAVPAFILERFIFIRETSHNAYRASSYVISSLIVYLPFFAVQGFTFAAITKVLLHLNCNFLKYWMILFASLITTNAYVMLVSALVPSYITGYAVVIATTALFFLTCGFFLKRTQIPLYWRWLHYISAIKYPFEALLTNEFKNDECYTGSPADLSPGPLGQVKPSFRHTMLNISSNCLIGEDVLSSMDVRKENIWYDIFILLAWGVLYRFFFYLVLRFYSKNERK 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1308 822 SMART AAA_5 79 279 IPR003593 GO:0016887
Dere01g1308 822 FunFam ABC transporter G family member 6 58 285 - -
Dere01g1308 822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 284 IPR027417 -
Dere01g1308 822 ProSitePatterns ABC transporters family signature. 194 208 IPR017871 GO:0005524|GO:0016887
Dere01g1308 822 MobiDBLite consensus disorder prediction 323 385 - -
Dere01g1308 822 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 28 809 - -
Dere01g1308 822 Gene3D - 42 285 IPR027417 -
Dere01g1308 822 Pfam ABC-2 type transporter 532 738 IPR013525 GO:0016020|GO:0140359
Dere01g1308 822 CDD ABCG_EPDR 43 276 - -
Dere01g1308 822 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 294 IPR003439 GO:0005524
Dere01g1308 822 MobiDBLite consensus disorder prediction 438 469 - -
Dere01g1308 822 Pfam ABC transporter 70 222 IPR003439 GO:0005524
Dere01g1308 822 MobiDBLite consensus disorder prediction 356 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1308 Dere-ChrDere01 25668124 25672062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1308 40 361 Calmodulin-binding Proteins AT2G36910 22.917 8.14e-12 67.4