Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1306 ATGGAACGGGATTTTTTGGGTTTGAGGTCGAAAATTGGTGCGGGGACCAAAAAAGTGGATACTGCTGATAAAGCAAAGGACCCAGCAGCAGTGAGGGGTTCAGGAATGCAGTGGTCATTCTCAAACAAGGTTTCTGCTGTTCCTCAATTGCTGTCCTTTAAGGCTACTCAGGAAGATAGGACAAGAAAGACTAGTCTTGATCCAGTGGCCTCATCTGGATATATGACCTTATCAACGGTTGATGCTTTCGACTCAAACCAGAAACCATTCTTGGGTGTGATCCAGAAAAGTTTGAACATGGGAAAACAAGTAGGAAACAAACATGCAATGACAGTGTATCCTATGCAACAATTTAATACACGCTCTGGCTGCCCTCAAGAAGCCAGAATAATTTCAGTCTCCAACCAATCAAATCAGAGGAGTCATGTTCTTCAATCTAATGTTACTACCACGGTTCAGAACATGGTCAATTCTGCCATAAAACCACACCCTCAAGGAGGAGCCCCGCTGATTGCCCCTGCATCTGTTCTTCCATCTAAAGGTTCCGTTGTTGGCACCACTGACTTAAGGAACTCTTCCAAACCCTCTGGCAAACCTCCTCAGCTGACCATTTTCTATGCTGGTTCAGTGTGCGTTTATGAAGACATATCTCCTGAGAAGGCCCAGGCTATCATGTTACTGGCTGGAAATGGGTGTATTCCAAATCAAAACATGGCAGTTTCCACGCCTCAGGTGCAAACATCAAACTCTAGGCCATCCAAAGATGATGGTTTTATCGTAAGCCAGTCCTACCCTACGCCATTACCAAGTCCTATTCCCATGACCTTCCATGTCAGCTCTCAGGCTGGGGGAGGATCTTCTAGCCACAATGAACTTGCAATGATGAGACCGGTAGGATCTTCTGCCGCTCCAAGTAGCCCTTTGGAGTCTCCTAGTGTCGTTGGCTCTGCAAAATCTGCAGCTACTAAAATGGCTCCACATGTGGGCTTGCCTCAGGCACGCAAAGCATCCCTGGCTCGGTTTTTAGAGAAGCGCAAGGAAAGGGTGACGAGCACATCACCGTACTATATGAGCAAGCAATCACCTGAATGCAACACTCCAGGATCAGATGATATTAGTTTCTCTGTCACTTCATCTGGTTCCAGTCCCCTGTCAGCCATCAACTAG 1167 0.467 MERDFLGLRSKIGAGTKKVDTADKAKDPAAVRGSGMQWSFSNKVSAVPQLLSFKATQEDRTRKTSLDPVASSGYMTLSTVDAFDSNQKPFLGVIQKSLNMGKQVGNKHAMTVYPMQQFNTRSGCPQEARIISVSNQSNQRSHVLQSNVTTTVQNMVNSAIKPHPQGGAPLIAPASVLPSKGSVVGTTDLRNSSKPSGKPPQLTIFYAGSVCVYEDISPEKAQAIMLLAGNGCIPNQNMAVSTPQVQTSNSRPSKDDGFIVSQSYPTPLPSPIPMTFHVSSQAGGGSSSHNELAMMRPVGSSAAPSSPLESPSVVGSAKSAATKMAPHVGLPQARKASLARFLEKRKERVTSTSPYYMSKQSPECNTPGSDDISFSVTSSGSSPLSAIN 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1306 388 MobiDBLite consensus disorder prediction 347 388 - -
Dere01g1306 388 ProSiteProfiles Tify domain profile. 195 230 IPR010399 -
Dere01g1306 388 MobiDBLite consensus disorder prediction 303 317 - -
Dere01g1306 388 Pfam tify domain 198 229 IPR010399 -
Dere01g1306 388 SMART tify_2 195 230 IPR010399 -
Dere01g1306 388 Pfam Jas motif 331 356 IPR018467 -
Dere01g1306 388 MobiDBLite consensus disorder prediction 351 388 - -
Dere01g1306 388 MobiDBLite consensus disorder prediction 298 333 - -
Dere01g1306 388 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 29 367 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1306 Dere-ChrDere01 25658146 25662290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1306 36 361 Tify Gene Family AT3G17860 41.617 1.97e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Dere01g1306 tify 6.3e-17 No_clan