Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1304 ATGCTGCCTCAAAAACTCTTTTTTTCGCTTACCCTCTTCCTCATTTTGCTCCCTTTAGCGAGACCAGATCTGGGTTCTGAGCGAGCCGCCCTCGTCGCTCTCCGTTCGGCGGTGGGAGGCCGAACCCTTTTCTGGAACGTCACCGAGCAGAGTCCCTGCAAGTGGGCTGGTGTCCAATGCGAGCATGACCACATTGTCGAGCTTCATCTTCCTGGTGTTGCGCTTTCGGGCCAATTACCTACTGGTATTTTCGGCAACCTCACTCACCTTCGCACTCTCAGCCTGCGTTTCAACGCCTTGACTGGTAGGCTCCCGTCAGATCTCGCTTCTTGCGTCAAACTTCGCAACCTTTACTTGCAGCGAAACTTGCTCTCCGGAGAAATCCCAGAATTCTTGTTCTCTTTGACTGACTTGGTTCGCCTTAATTTGGCGTTCAATAATTTTTCCGGTACGATTCCACCGGGGTTTAACAAATTGGTAAGGCTGAGGACTCTGTTTCTCGAGAACAACCAGTTTTCAGGTTCCATTCCTAGGTTGGACCTGATAAATCTTGAGCAGTTCAATGTGTCGAACAATATGCTAAACGGGTCGGTGCCAGAAAAGTTACAGACATTTTCTGAAGATTCATTTCTAGGCAATTCACTATGTGGTAAGCCCCTTAAGCTTTGTCCAGGAGATGGAACTGGGGCTGGAACTACTCCGGCGAGCGAGATTGAAAACAACCAGGGAAAGAAGAGAAAGAAATTATCTGGTGGGGCCATTGCCGGAATCGTCGTTGGATCTGCGGTGTTTCTCCTGTTGATTCTGTTCGCTCTGATCCTCCTCTGCCGAAAGAAGAATAGTAAGAAGTCAAGCTCTGTCGACGTTGCAACCATGAAGCATCCAGAAACGGAAATTCCTGGCGAGAAACCCGTTACAGATGTGGAGAATGATGGTCACAGTAATGGGTACTCGGTGGCTGCGGTGGCTGCAGCAGCCATGACCGGAAACGGCAAAGCAGAAGCGAACAGCAATGACGGAGCGAAGAAGTTGGTATTCTTTGGTAGTTCACCGAAGGTGTTTGATCTGGAGGATTTGCTTAGAGCTTCGGCGGAGGTTTTGGGTAAAGGGACATTTGGAACAGCGTATAAGGCGGTTCTGGAGGTTGGTCCGGTGGTCGCTGTGAAAAGGTTGAAGGACGTAACAATTTCTGAGAGGGAATTCAAGGAGAAGATTGAATTGGTGGGAGCAATGGATCATGAAAATTTGGTCCCTCTCAGGGCTTATTATTTCAGCAGGGATGAAAAGCTTCTCGTCTATGATTACATGTCAATGGGAAGTTTATCTGCACTCTTGCATGGAAACAAAGGGGCGGGTAGGACACCACTGAATTGGGAAATTAGATCAGGAATTGCACTTGGAGCTGCTCGTGGCATCGAGTACCTACATTTACAGGGGTCTAATGTTTCTCATGGAAACATAAAGTCATCCAACATCCTCCTCACCAAATCCTATGATGCCAGAGTGTCTGATTTTGGCCTTGCACATCTTGTTGGTCCCTCCTCCACTCCTAATCGGGTTGCCGGCTACCGGGCCCCTGAAGTCACTGATCCTCGCAAAGTTTCTCAGAAGGCAGATGTCTACAGCTTTGGTGTATTGCTCTTGGAACTTCTGACTGGAAAGGCTCCCACACATTCTCTCTTAAACGAGGAAGGAGTAGACCTCCCCAGATGGGTTCAGTCTGTTGTTAGAGAAGAGTGGACTTCTGAGGTGTTTGATCTTGAGCTCCTAAGGTATCAGAATGTTGAGGAAGAGATGGTTCAGTTGTTGCAGCTTGCAGTAGATTGTGCAGCTCAATATCCTGATAAGCGCCCTTCAATGTCTGAAGTGACACAACACATAGAAGAGCTCCGTCGTTCAAGCTTGAAAGAGGATCAAGACCAAATTCAGCAGCCTGATCTGATCAATGTAGATGATATGTCTTCTCGATGA 1971 0.481 MLPQKLFFSLTLFLILLPLARPDLGSERAALVALRSAVGGRTLFWNVTEQSPCKWAGVQCEHDHIVELHLPGVALSGQLPTGIFGNLTHLRTLSLRFNALTGRLPSDLASCVKLRNLYLQRNLLSGEIPEFLFSLTDLVRLNLAFNNFSGTIPPGFNKLVRLRTLFLENNQFSGSIPRLDLINLEQFNVSNNMLNGSVPEKLQTFSEDSFLGNSLCGKPLKLCPGDGTGAGTTPASEIENNQGKKRKKLSGGAIAGIVVGSAVFLLLILFALILLCRKKNSKKSSSVDVATMKHPETEIPGEKPVTDVENDGHSNGYSVAAVAAAAMTGNGKAEANSNDGAKKLVFFGSSPKVFDLEDLLRASAEVLGKGTFGTAYKAVLEVGPVVAVKRLKDVTISEREFKEKIELVGAMDHENLVPLRAYYFSRDEKLLVYDYMSMGSLSALLHGNKGAGRTPLNWEIRSGIALGAARGIEYLHLQGSNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHSLLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPSMSEVTQHIEELRRSSLKEDQDQIQQPDLINVDDMSSR 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1304 656 Pfam Leucine rich repeat 78 124 IPR001611 GO:0005515
Dere01g1304 656 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524
Dere01g1304 656 ProSiteProfiles Protein kinase domain profile. 361 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1304 656 MobiDBLite consensus disorder prediction 632 656 - -
Dere01g1304 656 SUPERFAMILY Protein kinase-like (PK-like) 365 628 IPR011009 -
Dere01g1304 656 FunFam pollen receptor-like kinase 1 330 435 - -
Dere01g1304 656 Pfam Protein kinase domain 364 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1304 656 SUPERFAMILY L domain-like 45 203 - -
Dere01g1304 656 FunFam Probable inactive receptor kinase RLK902 24 180 - -
Dere01g1304 656 Gene3D Ribonuclease Inhibitor 182 223 IPR032675 -
Dere01g1304 656 MobiDBLite consensus disorder prediction 640 656 - -
Dere01g1304 656 Gene3D Transferase(Phosphotransferase) domain 1 436 653 - -
Dere01g1304 656 PANTHER OS05G0588300 PROTEIN 7 634 - -
Dere01g1304 656 Pfam Leucine rich repeat N-terminal domain 26 60 IPR013210 -
Dere01g1304 656 Gene3D Ribonuclease Inhibitor 25 179 IPR032675 -
Dere01g1304 656 CDD STKc_IRAK 367 630 - -
Dere01g1304 656 Gene3D Phosphorylase Kinase; domain 1 326 435 - -
Dere01g1304 656 FunFam Probable inactive receptor kinase At1g48480 436 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1304 Dere-ChrDere01 25622318 25624759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1304 23 646 Receptor kinase-like Gene Family AT1G48480 65.877 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Dere01g1304 Pkinase 5.3e-39 CL0016