Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1302 ATGCATTCAATCTACAGTCCCTCTTGCTATGCTAACCTTAACCACCCTATCTCTGAGTTCAATCGTACTCCCAGCCGTTTGGTTCGATCCAATGTGTTACAATTCTCCTGCGCGCCTCTCACTGTTCTTTGTTTCGGATTGCGTGCTACTGATTCTGAATTTTTACCCAAAATTGGTTATTTTCAGAACCCAGTTTTCGCCCGCAGGAAACCCTCGGGTTGTGCAGTAGTCAGAGCCGCAGTAACTGATTATTATTCGACTTTGAAAGTTAGTAAGAATGCATCTTTGCAGGAGATCAAGAGTGCTTACAGAAAACTAGCCCGTAAGTACCATCCAGATATGAACAAGAGCCCCGGGGCTGAAGAGAAATTCAAGGAGATAAGTGCTGCATACGAGGTTCTATCAGATGATGAGAAAAGATCTTTATATGATCGCTTTGGTGAGGCAGGTCTACAAGGAGAAAATGGAGTTTCAGCTGGTGCTTCAGGGGTTGATCCCTTTGACGTATTTGATGCATTCTTTGGTCGTTCGGATGGTCTATTTGGAGGTGATGATGAACTAGGAGGAATGAACTTCAATTTGAGAAACAACAGAAGACGTGGTTTTGATATTCGGTATGACCTACATTTGAGCTTTGAAGAATCTATTTTTGGAGGACGAAGAGAAATTGAAGTTCCTTGTTTTCAGACATGTAATGATTGTGATGGTACAGGAGCTAAATCAAGAGATTGCATCAAACCCTGCACAAATTGTGGTGGCAGAGGAGGAGAAATGAAAAGTCAAAGAACGCCCTTTGGAGTAATGTCTCAGGTTTCAACCTGCTCTAAGTGCAGTGGTCTTGGCAAGATAATCACTGATCACTGTCAAAGGTGCAGTGGCAGTGGGCAGGTGCAGTCTAAACAGACGATGGATGTGGTCATTCCTCCTGGTGTCAATAATGGAGCAACAATGCAAATTCGAGGAGGAGGAAATTTTGATAAGAAAAGGGGTTTAGCTGGTGATCTTTATATAGTAATCCACGTGGATGAAAAGCAAGGAATTTGGAGAGAAGGTCTTCATTTGTACTCAAAGATTAATATCGACTTCACAGAGGCTATACTAGGGTCTGTTAAAAAGGTTGAAACTGTTGAAGGTATAAGGGATCTCCAAATTCCTTCTGGTATTCAACCTGGAGATTCTGTGAAGTTGTCACATTTGGGAGTTCCTGACATGAATAAACCATCTGTTCGAGGCAATCATTACTTCATTGTGAATGTTCTTATCCCTAAAGATATTAGTGGTGCTGAGCGTGTACTTGTTGAGGAATTGGCTTCACTAAGAGCCTCTGGCAAAGACAATATACTTTCTCCTAATGACACTGGTACACCTAAAGGGAGACTTAATGAATCCAAAAAGAGGCATGCAAAAGGTCATTCAAGCATGGGACGCAAACATGATTCTCTATGGGGATCAATCAAGAAACTTTTAAGGGGAGGGCAGTCTGAAGAAAGGTTCGCATCTATTGGCTTGGATTCATCAGCAACCTTGTGGAGACTTGGCAAGCCAAAATCTTCACTCCCAGATTCTTTTTTAGTCGGTTTGATTATAAGTTGTATTATTGTCTATATAGCGAGGTCTTCTGACTCTTTGTTTCAGAAACGAACCCTGCCCTCCACTCATAGAACACCAAGTGGAAGACAATAA 1683 0.4195 MHSIYSPSCYANLNHPISEFNRTPSRLVRSNVLQFSCAPLTVLCFGLRATDSEFLPKIGYFQNPVFARRKPSGCAVVRAAVTDYYSTLKVSKNASLQEIKSAYRKLARKYHPDMNKSPGAEEKFKEISAAYEVLSDDEKRSLYDRFGEAGLQGENGVSAGASGVDPFDVFDAFFGRSDGLFGGDDELGGMNFNLRNNRRRGFDIRYDLHLSFEESIFGGRREIEVPCFQTCNDCDGTGAKSRDCIKPCTNCGGRGGEMKSQRTPFGVMSQVSTCSKCSGLGKIITDHCQRCSGSGQVQSKQTMDVVIPPGVNNGATMQIRGGGNFDKKRGLAGDLYIVIHVDEKQGIWREGLHLYSKINIDFTEAILGSVKKVETVEGIRDLQIPSGIQPGDSVKLSHLGVPDMNKPSVRGNHYFIVNVLIPKDISGAERVLVEELASLRASGKDNILSPNDTGTPKGRLNESKKRHAKGHSSMGRKHDSLWGSIKKLLRGGQSEERFASIGLDSSATLWRLGKPKSSLPDSFLVGLIISCIIVYIARSSDSLFQKRTLPSTHRTPSGRQ 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1302 560 CDD DnaJ_C 203 425 - -
Dere01g1302 560 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 46 441 - -
Dere01g1302 560 Hamap Chaperone protein DnaJ [dnaJ]. 80 463 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Dere01g1302 560 FunFam Molecular chaperone Hsp40/DnaJ family protein 347 439 - -
Dere01g1302 560 ProSiteProfiles Zinc finger CR-type profile. 218 300 IPR001305 GO:0031072|GO:0051082
Dere01g1302 560 Gene3D - 348 439 - -
Dere01g1302 560 CDD DnaJ 83 136 IPR001623 -
Dere01g1302 560 Gene3D - 231 295 - -
Dere01g1302 560 SUPERFAMILY HSP40/DnaJ peptide-binding domain 349 430 IPR008971 GO:0006457|GO:0051082
Dere01g1302 560 SUPERFAMILY HSP40/DnaJ peptide-binding domain 198 341 IPR008971 GO:0006457|GO:0051082
Dere01g1302 560 ProSiteProfiles dnaJ domain profile. 83 147 IPR001623 -
Dere01g1302 560 FunFam Molecular chaperone DnaJ 223 300 - -
Dere01g1302 560 PRINTS DnaJ domain signature 85 103 IPR001623 -
Dere01g1302 560 PRINTS DnaJ domain signature 103 118 IPR001623 -
Dere01g1302 560 PRINTS DnaJ domain signature 139 158 IPR001623 -
Dere01g1302 560 PRINTS DnaJ domain signature 119 139 IPR001623 -
Dere01g1302 560 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 218 298 IPR036410 -
Dere01g1302 560 Gene3D DnaJ domain 80 183 IPR036869 -
Dere01g1302 560 FunFam Chaperone protein dnaJ A6 chloroplastic 80 186 - -
Dere01g1302 560 NCBIfam molecular chaperone DnaJ 83 438 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Dere01g1302 560 CDD DnaJ_zf 231 295 IPR001305 GO:0031072|GO:0051082
Dere01g1302 560 Pfam DnaJ C terminal domain 204 422 IPR002939 -
Dere01g1302 560 Pfam DnaJ central domain 231 295 IPR001305 GO:0031072|GO:0051082
Dere01g1302 560 Pfam DnaJ domain 83 144 IPR001623 -
Dere01g1302 560 SUPERFAMILY Chaperone J-domain 78 184 IPR036869 -
Dere01g1302 560 ProSitePatterns Nt-dnaJ domain signature. 124 143 IPR018253 -
Dere01g1302 560 Gene3D - 201 337 - -
Dere01g1302 560 MobiDBLite consensus disorder prediction 446 477 - -
Dere01g1302 560 SMART dnaj_3 82 139 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1302 Dere-ChrDere01 25594074 25606806 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1302 84 144 C2H2 Transcription Factor Family AT1G74250 44.776 1.03e-07 52.8