Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1292 ATGATTGGCATGTTAGGCTCTGAAGATTTCATGTCTACAGATCAAGAGGGTAAAAGAGAGATTTCTGAGAACATGTTGATTCAATATTCTGGTTTGGTCTGTGATTCAATTGAGATAGTCTTGTTGGCGGAGACGAGCTTTGTGTGTGAAACATCACATACAATGAGCTTGGACGTTCGACAAGAACGAAGGGATCGGTCTAGGGTTCCTGCCCAAGCTCCCCGTCAGGAATGGGTTCCTAGGGCATCTGTCGCTGCGACCACCACGAGTGCCCCTCCATCAAATTTGCCATTAGATCGAACTGGTGATGCTGGTTGCTCAAATAATAGTATTGCTCCAGCAGCAAATCGGCATAGAAGCAATCATGAATCAAGGGGTCACACAAGTCGGCCTATGAATCAGAGAAGGGAAAGGGAGAAAGGAAGGAGTGAGAATCAGGTGAAACAAGGAGTGAGGGACTCTAATTTGCCCCAACTGTTGCAAGAGATTCAGGAGAAACTTATGAAAAGTACAGTAGAATGCATGATTTGCTATGACATGGTCCGTAGAACTGCACCTATCTGGTCTTGCTCCAGCTGCTTCTCTATCTTTCACCTGAATTGTATAAAGAAGTGGGCACGGGCACCTTCATCTGTTGATGTGTCTGCGGAAAAGAATCAAGGAATTAATTGGCGGTGTCCTGGTTGTCAGTCTGTACAGCTTACATCATCAAGGGAGATTAAATATGTATGTTTTTGTGGAAAGAGGCCAGACCCGCCATCTGATTTGTATCTCACTCCACATTCTTGTGGAGAACCATGTGGGAAGCCTCTTGAGAAGGAGGTGTTGGTTACTGGAGGGAGAGGGAGTAAGGAGGATCTTTGCCCGCATCTTTGTGTATTGCAATGCCATCCAGGTCCATGCCCTCCTTGTAAAGCATTTGCACCACCTCGTCTGTGTCCTTGTGGGAAGAAAACAATTACCACTCGTTGCTCTGATCGTTCCTCTGTTCTTACCTGTGGTCAATGCTGTGATAAACTTCTTGAGTGTGGGCGTCATCTCTGTGAGCGTGTTTGTCATGTGGGTCCTTGTGATCCTTGTCAGGTTCTAATCAATGCCTCTTGTTTCTGCAATAAGAAGGTGGAGTTTATTCTTTGTGGGGACATGGCTGTGAAGGGTGAAATTAAAGCAGAAGGTGGAGTTTTTTCCTGTGGTTCTGATTGTGGAAAAAAGCTAAATTGTGGTAATCATGTCTGTAGTGGGATTTGTCATCCAGGCAACTGTGGGGAGTGTGAATTTCTACCAGGCCAGATTAACACATGCTGTTGTGGGAAGACAAGATTGGAGGGGGAGCGGCAGAGTTGTCTGGATCCAATACCAACCTGCTTACAAGTATGTGACAAGCCCCTTTCTTGTGGGATGCATCATTGTAAAGAGGTATGTCATGCTGGGGATTGTCCACCATGTTTGGTTCTAGTCTCCCAAAAGTGTCGTTGTGGGTCAACTTCCCGAACTGTGGAGTGCTATAAGACAATGAGGGAGAATGAGAAATTTACTTGTGATAAGCCTTGTGGGCGGAAAAAGAACTGTGGAAGGCACCGATGTAGTGAACGGTGCTGTCCACTTTCTAATCCTAATAATCATCTAAGTGGGGATTGGGATCCTCACTTTTGTTCCATGCCATGCGGAAAGAAGCTGAGGTGTGGGCAACATGCATGCGAATCTCTGTGTCACAGTGGCCATTGTCCGCCTTGTCTTGAAACTATCTTCACTGATTTGACATGTGCTTGTGGTAGGACTTCAATCCCTCCTCTGCTGCCTTGTGGTACACCCCTTCCCTCATGTCAGCTTCCATGTGCAGTTCCTCAGCCTTGTGGCCATTCAGCCTCCCACAGCTGCCACTTTGGTGATTGCCCTCCTTGTTCGGTGCCTGTAGCTAAGGAATGTATTGGCGGGCATGTGGTTCTTAGGAATATACCTTGTGGTTCAAAGGATATTAGATGTAATAAACTGTGTGGGAAGACCAGACAGTGTGGTTTACATGCTTGTGGCCGAACATGTCACCCTCCCCCTTGTGATAATCCATCTAGTTGTGAGCAAGGTTTCCGATCATCCTGTGGTCAAACATGTGGTGCTCCAAGGAGAGACTGCAGGCATACATGTACAGCTGCATGCCACCCGTTGTCCCCATGCCCTGATATAAGATGTGAGTACCCTGTTACAATTACTTGTTCTTGTGGCCGTATAGCAGCAAATGTTCCTTGTGGTGCCGGTGGTGGTAGTGGTAATTATAATGCTGATTCCATACATGAAGCTTCCATAATTCAAAAGCTGCCTGTGCCACTTCAACCAGTGGAATCAATTGGCAAATCGATCCCCCTTGGACAAAGAAAGCTGACATGTGATGATGAATGTGCTAAGTTGGAGCGCAAAAGGGTTCTTGCAGATGCTTTTGATGTTACCACTCCAAACTTGGATTCTCTTCATTTTGGTGAGAACTCTTTTGCTTCTGAATTGCTTTCAGACATGTTAAGGCGTGATCCCAAGTGGGTTTTGTCTGTGGAGGAGAGATGCAAATTTTTAGTTCTTGGAAAGAGCAAAGGAGTTACACATGGGTTAAAAGTTCATGTTTTCTGTCCTATGCTCAAGGATAAGAGAGATGCAATCAGGGTTATTGCTGAGAGATGGAAGCTGGTTGTGAGTGCTGCTGGTTGGGAGCCAAAGCGTTTTGTTGTAGTTCATGTTACCCAGAAGTCAAAGGCTCCTGCTCGTGTGCTTGGGGTTAAGGGTACTACAACTGTAAATACGCCCTTTCCACCAGCATTTGATCCATTGGTAGATATGGATCCCCGGCTTGTTGTCTCTTTCCCAGACTTACCGAGGGAAGCTGATATAAGTGCTTTGGTCTTGAGGTTTGGTGGTGAGTGTGAACTTGTTTGGTTAAATGACAAAAATGCATTGGCTGTTTTTCATGATCCTAGCCGAGCTGCAACTGCAATGAGGAGGTTGGATCATGGAACAGTTTATCATGGAGCTGTGGTGGTTGTCCCCAATGCTGCGTCATCGGCGGCATCTTCAGCTACAAGTGCTTGGGGAGGAGCTGGAATGGTGAAAGAAGGAGGAGCACTGGCAGCATTGAAGGGTAATCCATGGAAAAAAGCTGTGGTTCAAGAGCCTGGCTGGAGAGAAGATTCTTGGGGTGATGAAGAGTGGGCTGTTAGTTCTGGTAATCTCCAGCCTTCTGTCTGGACAAAAGAAGCAGCAAAAGTCCCAATTGCTGCTTCATTAAATCGGTGGAGTGTCTTAGACCAAGAGTTATCTTCAAGTTCATCTGTTGTGGCATCTAGAACTGAAATTTCTGGGAGAAACTCAGCAAGTTCATCTTCTGTCCCAAAGTTGGAATCTGATGCCGTTGGTTCAATTCTAGAAGGACAGCGTGGAGGGAATGTTAATGCAACGGAAGTTTCTGAAGTAGTAGATGATTGGGAGAAAGCTTATGAATGA 3483 0.4602 MIGMLGSEDFMSTDQEGKREISENMLIQYSGLVCDSIEIVLLAETSFVCETSHTMSLDVRQERRDRSRVPAQAPRQEWVPRASVAATTTSAPPSNLPLDRTGDAGCSNNSIAPAANRHRSNHESRGHTSRPMNQRREREKGRSENQVKQGVRDSNLPQLLQEIQEKLMKSTVECMICYDMVRRTAPIWSCSSCFSIFHLNCIKKWARAPSSVDVSAEKNQGINWRCPGCQSVQLTSSREIKYVCFCGKRPDPPSDLYLTPHSCGEPCGKPLEKEVLVTGGRGSKEDLCPHLCVLQCHPGPCPPCKAFAPPRLCPCGKKTITTRCSDRSSVLTCGQCCDKLLECGRHLCERVCHVGPCDPCQVLINASCFCNKKVEFILCGDMAVKGEIKAEGGVFSCGSDCGKKLNCGNHVCSGICHPGNCGECEFLPGQINTCCCGKTRLEGERQSCLDPIPTCLQVCDKPLSCGMHHCKEVCHAGDCPPCLVLVSQKCRCGSTSRTVECYKTMRENEKFTCDKPCGRKKNCGRHRCSERCCPLSNPNNHLSGDWDPHFCSMPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGRTSIPPLLPCGTPLPSCQLPCAVPQPCGHSASHSCHFGDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHPPPCDNPSSCEQGFRSSCGQTCGAPRRDCRHTCTAACHPLSPCPDIRCEYPVTITCSCGRIAANVPCGAGGGSGNYNADSIHEASIIQKLPVPLQPVESIGKSIPLGQRKLTCDDECAKLERKRVLADAFDVTTPNLDSLHFGENSFASELLSDMLRRDPKWVLSVEERCKFLVLGKSKGVTHGLKVHVFCPMLKDKRDAIRVIAERWKLVVSAAGWEPKRFVVVHVTQKSKAPARVLGVKGTTTVNTPFPPAFDPLVDMDPRLVVSFPDLPREADISALVLRFGGECELVWLNDKNALAVFHDPSRAATAMRRLDHGTVYHGAVVVVPNAASSAASSATSAWGGAGMVKEGGALAALKGNPWKKAVVQEPGWREDSWGDEEWAVSSGNLQPSVWTKEAAKVPIAASLNRWSVLDQELSSSSSVVASRTEISGRNSASSSSVPKLESDAVGSILEGQRGGNVNATEVSEVVDDWEKAYE 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1292 1160 MobiDBLite consensus disorder prediction 57 71 - -
Dere01g1292 1160 CDD NF-X1-zinc-finger 699 750 - -
Dere01g1292 1160 CDD NF-X1-zinc-finger 263 326 - -
Dere01g1292 1160 ProSiteProfiles Zinc finger PHD-type profile. 171 232 IPR019787 -
Dere01g1292 1160 CDD NF-X1-zinc-finger 455 503 - -
Dere01g1292 1160 ProSiteProfiles Zinc finger RING-type profile. 174 230 IPR001841 -
Dere01g1292 1160 MobiDBLite consensus disorder prediction 118 147 - -
Dere01g1292 1160 MobiDBLite consensus disorder prediction 1106 1148 - -
Dere01g1292 1160 CDD RING-CH-C4HC3_NFX1-like 173 230 - -
Dere01g1292 1160 SMART znfxneu3 671 693 IPR000967 GO:0005634|GO:0008270
Dere01g1292 1160 SMART znfxneu3 561 580 IPR000967 GO:0005634|GO:0008270
Dere01g1292 1160 SMART znfxneu3 465 484 IPR000967 GO:0005634|GO:0008270
Dere01g1292 1160 SMART znfxneu3 618 636 IPR000967 GO:0005634|GO:0008270
Dere01g1292 1160 SMART znfxneu3 407 426 IPR000967 GO:0005634|GO:0008270
Dere01g1292 1160 SMART znfxneu3 288 306 IPR000967 GO:0005634|GO:0008270
Dere01g1292 1160 SMART znfxneu3 343 362 IPR000967 GO:0005634|GO:0008270
Dere01g1292 1160 SMART znfxneu3 710 731 IPR000967 GO:0005634|GO:0008270
Dere01g1292 1160 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 115 1062 IPR034078 GO:0003700
Dere01g1292 1160 Pfam NF-X1 type zinc finger 561 578 IPR000967 GO:0005634|GO:0008270
Dere01g1292 1160 Pfam NF-X1 type zinc finger 407 424 IPR000967 GO:0005634|GO:0008270
Dere01g1292 1160 Pfam NF-X1 type zinc finger 343 361 IPR000967 GO:0005634|GO:0008270
Dere01g1292 1160 Pfam NF-X1 type zinc finger 671 691 IPR000967 GO:0005634|GO:0008270
Dere01g1292 1160 Pfam NF-X1 type zinc finger 290 305 IPR000967 GO:0005634|GO:0008270
Dere01g1292 1160 Pfam NF-X1 type zinc finger 465 482 IPR000967 GO:0005634|GO:0008270
Dere01g1292 1160 Pfam NF-X1 type zinc finger 523 534 IPR000967 GO:0005634|GO:0008270
Dere01g1292 1160 Pfam NF-X1 type zinc finger 618 635 IPR000967 GO:0005634|GO:0008270
Dere01g1292 1160 SUPERFAMILY RING/U-box 163 234 - -
Dere01g1292 1160 CDD NF-X1-zinc-finger 397 442 - -
Dere01g1292 1160 CDD NF-X1-zinc-finger 333 381 - -
Dere01g1292 1160 CDD NF-X1-zinc-finger 551 603 - -
Dere01g1292 1160 MobiDBLite consensus disorder prediction 57 150 - -
Dere01g1292 1160 CDD NF-X1-zinc-finger 608 656 - -
Dere01g1292 1160 MobiDBLite consensus disorder prediction 1106 1127 - -
Dere01g1292 1160 MobiDBLite consensus disorder prediction 82 117 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Dere01g1292 zf-NF-X1 2.7 No_clan