Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1287 ATGGCAAGAGAGAGCATGAACATGCATAGAGGGACGAGAAGGAGGGAAGAAGAAGAAGAAGATCGATATTTGGGTTTATGTTGGAGACATGGAGGAAGCCCTACTCGTCTCTGTGAGAACTTCGTCATTCATCCCCATAACTGGTGGTATACGGTGTGGAAGCATTTCATTCTAATATGGGCAGTGTACTCTTCCTTCTTCACTCCCATGGAGTTCGGCTTCTTCAGAGGCTTGCCGGAGGAGATCTTCCTCCTTGACATTGCCGGCCAAATTGCTTTCCTCATTGACATCGTCGTCCGATTTTTTGTCGCCTATAATGACACCCACTCACAGTGCTGGGTCTACAACCGCCGTCAAATCGCCATGAGGTACTTGAAGTCTCGCTTCACGCTTGATTTTCTGGGTTGTCTGCCGTGGGATTATATTTACAAGGCTACTGGCAGGAAGGAGCCAGTCAGATATCTTCTATGGATCAGGCTAAGTCGAGCTTGTAGAGTTACTGAATTTTTTGAGAGGCTGGAGAAAGATATTAGGATCAATTACCTCTGTACTAGAATTGTGAAACTTCTTGTTGTTGAACTCTACTCTACACATACAGCTGCCTGCATCTTCTACTATCTTGCTACCACTATGCCTCCCTCCAATGAAGGTTATACATGGATAGGCAGCTTGAAGATGGGTGATTATAGCTATTCAGACTTTAGAGATATTAGTCTTTGGAGGCGTTATGTGACAGCACTCTACTTTGCAATTGTTACCATGGTAACTGTTGGCTATGGAGACATTCATGCAGTCAATGTCAGGGAAATGATATTTGTCATGGTTTTTGTTTCCTCTGACATGATTTTGGGTGCTTATCTTCTTGGTAATATGACAGCCTTGATCGTGAAAGGATCAAAAACAGAGAGGTTCAGGGATAAAATGACTGCACTTATCAAGTACATGAATAATATTAATTTGGACAAGCAGATAGTGAAGGAGATTAAAGGCCATTTGCGCTTACAGTATGACCGCAGTTACACTGAGGCTGCTATTAATGATGATATTCCAGCTTCAATTCGCACAAAGGTTTCATTGAATTTGTATGAGCAGTTCCTTCAGAGAGCTTGTCTTTTTAAGGGATGCTCTTCTGGGTTCATTAAGCTGATTGCAATCAAAGTCCACGAAGAGTTTTTCCTCCCAGGAGAAGTTATTATGGAGCAAGGAGATGTCATAGATCAACTTTACCTTGTATGTCATGGTGAGCTGGATGCACTGAGAGGGGAAGATGATGAAAGAGAAGAGCTAGTTAAGCAATTTCATACATATAGTTCCTTTGGCGAGGTTTCTTTTCTTTGCAATATGCCTCATCCTTACATGGTTCGTGCCCGTGAATTTTGCAAAGTTTTGCGACTTGATAAACAATCCTTTAGAGAAACACTGAGAATATACTATTTAGATGGTCAAGTTATCTTGAACAATGTTCTTGAGGGAAAAGACTTGGGTCTTCGGCATAAGCTTTTGGAATCAGATTTCACCCTGACTATTGGAACCCATGAAATAGAGCTGGCTATGAGGATTAATTGTGCTGCCTATGAGGGGGATTTCTATCTTTTAAGGCATTTAATTGGATCCGGAATAGATCCCAACAAAACTGATTATGATGGAAGATCACCCTTGCATATAGCTGCTTCCAAAGGATATGCGGATATTGCTAGCTTTCTTATTGGAAAAGGAGTGAATATCAATTTACCAGATAAATTTGGGAATACTCCCTTGCTCGGAGCCATAAAGAATGGACAAAAAGAAATAGCTTCTTTACTTGTAAATAAGGGGGCTACTATTACTATAGATGATGCTGGAAGTTTTCTATGCATGACTGTCGCAAAGAAGGAGCTGGACCTTTTAAGAAAGGTTTTGGCCCATGGTATAAATCCAAATTCCAGAAATTACGATCAGCGAACAGCTCTTCACATAGCTACCTCAGAGGGTTTATTTACAGAGGCTGAATTGCTTTTAGAAGCAGGAGCAAGTGTTTTATTAACGGACAGGTGGGGATATTCACCACTTGATGAAGCTCGTATAGGTGGAAATAGGAATATGATCAACTTGCTTGAAGTAGCAAAAATTTCCCAGCTGGCAGAGCTATCCAATAGTATTCAAGAAATTCATGGTAAGCATTCTAATATATCATATACTTGCACTGAGTCTACGGAAACACTTCTTTCGCCATCAACAGATGAAAGTCCAAAAAAGAAATGCACAGTATTTCCTTTCCACCCATGGGATCACAAAACGGATAGAAGAGTAGGAACTGTCCTATGGGTGCCGCAAAGCATTGAAGAGTTAATAAAGGTGGCAAAGGAACATCTGAAATGTTCTAGTGGTTCCTGTATTTTATCAGAACATGGTGGTAAAATTCTTGATGTAGACACGATTAGCAATGATGAGAAGCTATTTCTAGTGAGTGAAGCACGAAGTGAGGTGCAAACAGTGGAAGAATGCTCTGGTTATCCAAGTGGGCAGCACTAA 2511 0.4106 MARESMNMHRGTRRREEEEEDRYLGLCWRHGGSPTRLCENFVIHPHNWWYTVWKHFILIWAVYSSFFTPMEFGFFRGLPEEIFLLDIAGQIAFLIDIVVRFFVAYNDTHSQCWVYNRRQIAMRYLKSRFTLDFLGCLPWDYIYKATGRKEPVRYLLWIRLSRACRVTEFFERLEKDIRINYLCTRIVKLLVVELYSTHTAACIFYYLATTMPPSNEGYTWIGSLKMGDYSYSDFRDISLWRRYVTALYFAIVTMVTVGYGDIHAVNVREMIFVMVFVSSDMILGAYLLGNMTALIVKGSKTERFRDKMTALIKYMNNINLDKQIVKEIKGHLRLQYDRSYTEAAINDDIPASIRTKVSLNLYEQFLQRACLFKGCSSGFIKLIAIKVHEEFFLPGEVIMEQGDVIDQLYLVCHGELDALRGEDDEREELVKQFHTYSSFGEVSFLCNMPHPYMVRAREFCKVLRLDKQSFRETLRIYYLDGQVILNNVLEGKDLGLRHKLLESDFTLTIGTHEIELAMRINCAAYEGDFYLLRHLIGSGIDPNKTDYDGRSPLHIAASKGYADIASFLIGKGVNINLPDKFGNTPLLGAIKNGQKEIASLLVNKGATITIDDAGSFLCMTVAKKELDLLRKVLAHGINPNSRNYDQRTALHIATSEGLFTEAELLLEAGASVLLTDRWGYSPLDEARIGGNRNMINLLEVAKISQLAELSNSIQEIHGKHSNISYTCTESTETLLSPSTDESPKKKCTVFPFHPWDHKTDRRVGTVLWVPQSIEELIKVAKEHLKCSSGSCILSEHGGKILDVDTISNDEKLFLVSEARSEVQTVEECSGYPSGQH 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1287 836 CDD CAP_ED 371 477 IPR000595 -
Dere01g1287 836 Pfam Ankyrin repeats (many copies) 633 686 IPR002110 GO:0005515
Dere01g1287 836 Pfam Ankyrin repeats (3 copies) 522 612 IPR002110 GO:0005515
Dere01g1287 836 PRINTS EAG/ELK/ERG potassium channel family signature 86 96 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere01g1287 836 PRINTS EAG/ELK/ERG potassium channel family signature 287 296 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere01g1287 836 PRINTS EAG/ELK/ERG potassium channel family signature 454 462 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere01g1287 836 PRINTS EAG/ELK/ERG potassium channel family signature 195 205 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere01g1287 836 PRINTS EAG/ELK/ERG potassium channel family signature 243 260 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere01g1287 836 Pfam Ion transport protein 51 296 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Dere01g1287 836 SMART cnmp_10 371 489 IPR000595 -
Dere01g1287 836 Gene3D - 612 708 IPR036770 -
Dere01g1287 836 FunFam Potassium channel KAT2 359 494 - -
Dere01g1287 836 Gene3D Jelly Rolls 341 500 IPR014710 -
Dere01g1287 836 ProSiteProfiles cAMP/cGMP binding motif profile. 371 474 IPR000595 -
Dere01g1287 836 ProSiteProfiles Ankyrin repeat region circular profile. 548 580 - -
Dere01g1287 836 SMART ANK_2a 548 577 IPR002110 GO:0005515
Dere01g1287 836 SMART ANK_2a 581 610 IPR002110 GO:0005515
Dere01g1287 836 SMART ANK_2a 515 544 IPR002110 GO:0005515
Dere01g1287 836 SMART ANK_2a 645 674 IPR002110 GO:0005515
Dere01g1287 836 SMART ANK_2a 612 641 IPR002110 GO:0005515
Dere01g1287 836 PANTHER POTASSIUM CHANNEL AKT1 28 819 IPR045319 GO:0005249|GO:0006813
Dere01g1287 836 ProSiteProfiles Ankyrin repeat profile. 581 613 IPR002110 GO:0005515
Dere01g1287 836 ProSiteProfiles Ankyrin repeat profile. 645 677 IPR002110 GO:0005515
Dere01g1287 836 ProSiteProfiles Ankyrin repeat region circular profile. 581 612 - -
Dere01g1287 836 FunFam Potassium channel SKOR 51 296 - -
Dere01g1287 836 Gene3D - 51 297 - -
Dere01g1287 836 Gene3D - 513 611 IPR036770 -
Dere01g1287 836 ProSiteProfiles Ankyrin repeat region circular profile. 645 677 - -
Dere01g1287 836 ProSiteProfiles Ankyrin repeat profile. 548 580 IPR002110 GO:0005515
Dere01g1287 836 Pfam Cyclic nucleotide-binding domain 391 475 IPR000595 -
Dere01g1287 836 SUPERFAMILY cAMP-binding domain-like 299 488 IPR018490 -
Dere01g1287 836 ProSiteProfiles KHA domain profile. 746 832 IPR021789 -
Dere01g1287 836 Pfam KHA, dimerisation domain of potassium ion channel 745 814 IPR021789 -
Dere01g1287 836 SUPERFAMILY Ankyrin repeat 518 698 IPR036770 -
Dere01g1287 836 SUPERFAMILY Voltage-gated potassium channels 44 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1287 Dere-ChrDere01 25451652 25459869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1287 40 677 Ion Channels AT5G37500 60.152 0.0 837