Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1282 ATGGTACTAGGATGGCGAAGAAGGAAGAACAGCCGCCGCAACGGCAAACCCAATATCGAGCTTGTAACTCCCAACCATTTCCGATGCCCTGTTTCCCTCGATTTGATGAAAGACCCCGTCACATTATCCACTGGGATCACCTACGATCGAGAAAGCATCGAAAGGTGGTTCCTTGACGGGAATTTCACATGCCCTGTCACGAATCAGGTTCTCAGGAACTTCGATCTGATTCCCAATCACACTCTTCGTATAATGATTCAAGATTGGTGTGTCGAAAATCGACAACATGGGGTGGAGAGAATTCCGACTCCGAGAATACCCATTTCCCCAATCGAAGTCGCGGAGGTTCTTCTTCAAGTGAAGTCGTCAGCTAGACGTTTGGATCAGTATGGGTGTCTCGAATTGGTCCAGAAAATTGAGAAATGGGGTGAAGAGAGCGAGAGAAATAGGAAATGTATAGTTGAGAATGGAGGTACTGGTGCTCTGGCCTCTGCTTTTGATGCGTTTGCGAATGATTCGATTGAGAAGAATCTGAGTGTGTTGGAAGAGATTTTATCTGCTCTTAATTGGATGTTCCCACTTCAAATGGAAGCCCAGAAATCTTTGGGATCTCAAGCTTCGTTACGTTGCATGGTGTGGTTTCTGAAGCATCAAGATCTTGCAGGGAAAGAGAAGTCCATTGTTGCTCTAAGGGAGCTTCTTTCTTTTGGTGATGAGGAACATTTGGAGATTTTGGCAGAGATTGAAGGAGTCAACGAACTATTGGTGGATTTTATTACCAAAAGAATAAGTCCAACCATTACAAAAGCTTCATTGGCTGTTGTTTTCTACATGGTTTCATCATCATCTTCTTCAAGTAAGAAGATGAAATTGGGATTTACTGAACTGGGGTTGGTTTCTTCGTCGCTGGAGATTCTCCTCGACTCAGAAAGAAGCCTTTCTGAGAAGGCTTTGGGTGTTCTTGATTCGCTCTGCTCTTGTGAAGAAGGCAGAGAAAAAGCTTACAGTAATGCCTTGACAATTCCTGTACTGGTGAAGAAGATACTGAGAGTTTCAGCCATGGCCACAGATTCCTCTGTTTCTGCTCTATGGAAGCTGTGCAAGAATGGAGATAAAGATGAAGGAAGCCCTCTGGTTGAGGCACTGCAAGTTGGTGCGTTTCAGAAGCTATTGTTGGTGTTGCAGGTTGGATGTGATGATGAAACGAAGGTGAAAGCCACTGAGCTTCTCAAACTTCTGAATCCTTACAGGGCTGGCTTGGAGTGCATAGACTCAGATTTCAAAAATCTCAAGAGATCATTTTAG 1305 0.4429 MVLGWRRRKNSRRNGKPNIELVTPNHFRCPVSLDLMKDPVTLSTGITYDRESIERWFLDGNFTCPVTNQVLRNFDLIPNHTLRIMIQDWCVENRQHGVERIPTPRIPISPIEVAEVLLQVKSSARRLDQYGCLELVQKIEKWGEESERNRKCIVENGGTGALASAFDAFANDSIEKNLSVLEEILSALNWMFPLQMEAQKSLGSQASLRCMVWFLKHQDLAGKEKSIVALRELLSFGDEEHLEILAEIEGVNELLVDFITKRISPTITKASLAVVFYMVSSSSSSSKKMKLGFTELGLVSSSLEILLDSERSLSEKALGVLDSLCSCEEGREKAYSNALTIPVLVKKILRVSAMATDSSVSALWKLCKNGDKDEGSPLVEALQVGAFQKLLLVLQVGCDDETKVKATELLKLLNPYRAGLECIDSDFKNLKRSF 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1282 434 SMART Ubox_2 26 89 IPR003613 GO:0004842|GO:0016567
Dere01g1282 434 Pfam U-box domain 24 94 IPR003613 GO:0004842|GO:0016567
Dere01g1282 434 CDD RING-Ubox_PUB 24 76 IPR045210 -
Dere01g1282 434 Gene3D - 121 422 IPR011989 -
Dere01g1282 434 SUPERFAMILY RING/U-box 21 99 - -
Dere01g1282 434 FunFam RING-type E3 ubiquitin transferase 23 94 - -
Dere01g1282 434 PANTHER WDSAM1 PROTEIN 21 414 IPR045185 GO:0061630
Dere01g1282 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 101 IPR013083 -
Dere01g1282 434 ProSiteProfiles U-box domain profile. 22 96 IPR003613 GO:0004842|GO:0016567
Dere01g1282 434 SUPERFAMILY ARM repeat 141 413 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1282 Dere-ChrDere01 25434527 25435831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1282 5 434 U-box Gene Family AT5G37490 45.805 1.22e-121 359