Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1274 ATGCCCCAGAATAAGATTTCCAAAGACCCAACAATATCGAATCCGATTCCTGATCTTTCCCTTCACATAAGCTTACCCAACAGTGCTCCATCTTCAATTTGCACCGAAAATAACGAAGAAGGGGATTCGTCGTTTGATATATGGAGAAGTAGTACAGAGGTGGATGGCCTCAAATCCCTCAGTGAGAGCTCTATCAGAGGTACGCGCCTCTCTCTCTCCAATCATGTTCCCACAAGTGGGTCTGAGGTTGAGAGCCCATGGAGGAGGAGAAGAAGCGACGACGTCGTTAGAGGCAGACAAGATGGGGTTTGGGTTTCAGAGGGACTCAATTTAAGACCCATCAAAGGAATCCCCTTGCAGGATTCAAATATTTCTCTATACCCACTTCAGCTTCCCTATCCTGATTATTCAACTTCTTATAATAAAAGTTATAGGCCTTGCGATAATAACAGTTCTTTTGGGGGTAATTATAATATTGTAGACCACCCAATCTCAAGGTTTAATGGGATAAGCATGGAGAGTCTAAGACCCTACCACCCCCATGGCCATCATAATCAGTTTCAGTATCATCATCAGTTTGGTTCTACTTCTGATTTCTCAAACGGATTTGGGAGGTCAAGGATATTGCCTTCAAGGCTTCACAATAACAAGAGGAACATGAGGGCTCCCAGAATGCGTTGGACTAGCTCTCTTCATGCTCGTTTTGTTCACGCCGTTGAGCTCCTTGGGGGCCATGAAAGGGCTACCCCTAAGTCGGTTTTAGAGCTTATGGATGTCAAAGATCTAACACTAGCTCATGTCAAGAGCCATTTGCAGATGTATCGAACTGTTAAGAACACTGACAAACCTGCAGCTTCCTCAGATGGAGATGAAGACTTCATGAGCCTAACGCTACCAACTAATGAAAATGAGCACTATTTTTCACCCAACAAGAGAGGACCTACAAATACATCTTCTCTAGAGCAGGAAATGGGCTACACTAGCACCAATCTGTGGGGTAATTCTTCCAGTAGACGAACATGGGCACAAGCTAGTTCCATAGATGTGGAAGACGTAATTAGACCACCAGATAACCTGTCATCTTCTCAGCACAGGGCCGAGAAACAGTCTGAGGGAGGCAATTTTTTACAGTCAAGAAGCTTCAAGGACTCTGAGAATTTAAGCTTGGAGTTCACCCTAGGGAGACCAACTTGGCAAAGCAACGAACATGCCTGA 1215 0.4469 MPQNKISKDPTISNPIPDLSLHISLPNSAPSSICTENNEEGDSSFDIWRSSTEVDGLKSLSESSIRGTRLSLSNHVPTSGSEVESPWRRRRSDDVVRGRQDGVWVSEGLNLRPIKGIPLQDSNISLYPLQLPYPDYSTSYNKSYRPCDNNSSFGGNYNIVDHPISRFNGISMESLRPYHPHGHHNQFQYHHQFGSTSDFSNGFGRSRILPSRLHNNKRNMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKNTDKPAASSDGDEDFMSLTLPTNENEHYFSPNKRGPTNTSSLEQEMGYTSTNLWGNSSSRRTWAQASSIDVEDVIRPPDNLSSSQHRAEKQSEGGNFLQSRSFKDSENLSLEFTLGRPTWQSNEHA 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1274 404 Pfam Myb-like DNA-binding domain 224 275 IPR001005 -
Dere01g1274 404 MobiDBLite consensus disorder prediction 301 321 - -
Dere01g1274 404 NCBIfam myb-like DNA-binding domain, SHAQKYF class 223 276 IPR006447 GO:0003677
Dere01g1274 404 MobiDBLite consensus disorder prediction 352 381 - -
Dere01g1274 404 SUPERFAMILY Homeodomain-like 220 277 IPR009057 -
Dere01g1274 404 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 17 403 IPR044847 GO:0000976|GO:0006355|GO:0010158
Dere01g1274 404 MobiDBLite consensus disorder prediction 356 381 - -
Dere01g1274 404 Gene3D - 222 279 - -
Dere01g1274 404 FunFam Myb family transcription factor 221 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1274 Dere-ChrDere01 25347426 25353806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1274 16 398 G2-like Transcription Factor Family AT5G16560 39.709 4.02e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere01g1274 None None None