Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1267 ATGGAAGCAGGAGGAGGAGATCATAGTAACTCATCAAACTCTATCTACAGAGAGTGTCTGCGCAACCATGCAGCCAGCCTCGGCAGCTACGCCACCGACGGCTGCGGCGAGTTCACCCTCGACGAAACCTCCCCGGGCGGCTGCCTCCAATGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCAAGGTGACGTGTCCTCCGCCCCCGAGAGGGCTCGGCTACACCAGCAGCCGGGGCGGCCGGGAGCCTCCGGAGCTGTCGGCCGACCTCATGGAGTATAGCGGCGGTGAGGGGACGCCGCCGAGTGGGATGTTGGAGGCCGGAGAGAGGACGGGGACGGCGGGGAAGAAGAGGTTCAGGACGAAGTTCACGGCGGAGCAGAAGGAGAAGATGCTGGGGTTTGCAGAGAAGCTGGGATGGAAGCTGCAAAGGAAGGATCTAGACGATGAGATAGAGAGGTTCTGCAGAGGAGTTGGGGTGAGCAGGCAAGTGTTCAAGGTGTGGATGCATAACCATAAGAACTCTTCTTCCTCTTCTTCTGCCTCTACTGGCAATGCCTCCTCTCTCACTCAGTGA 579 0.6062 MEAGGGDHSNSSNSIYRECLRNHAASLGSYATDGCGEFTLDETSPGGCLQCAACGCHRNFHRKVTCPPPPRGLGYTSSRGGREPPELSADLMEYSGGEGTPPSGMLEAGERTGTAGKKRFRTKFTAEQKEKMLGFAEKLGWKLQRKDLDDEIERFCRGVGVSRQVFKVWMHNHKNSSSSSSASTGNASSLTQ 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1267 192 NCBIfam homeobox domain, ZF-HD class 117 175 IPR006455 -
Dere01g1267 192 MobiDBLite consensus disorder prediction 67 115 - -
Dere01g1267 192 Gene3D - 103 181 - -
Dere01g1267 192 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 16 64 IPR006456 -
Dere01g1267 192 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 16 63 IPR006456 -
Dere01g1267 192 SUPERFAMILY Homeodomain-like 109 175 IPR009057 -
Dere01g1267 192 Pfam ZF-HD protein dimerisation region 15 65 IPR006456 -
Dere01g1267 192 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 12 176 - -
Dere01g1267 192 MobiDBLite consensus disorder prediction 171 192 - -
Dere01g1267 192 FunFam Zinc-finger homeodomain protein 2 105 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1267 Dere-ChrDere01 25204719 25205297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1267 16 176 ZF-HD Transcription Factor Family AT4G24660 47.619 1.05e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dere01g1267 ZF-HD_dimer 1.7e-22 No_clan