Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1266 ATGTCAGTTCCAAGCACGGAGCAGTTCTCAAGCGCAGAGAATGGCACTAGCACTACTACTAACAAGCGGAAGAGAAGGCCGGCCGGAACCCCAGATCCGGATGCGGAGGTGGTGTCGCTGTCACCGAAGACGCTATTGGAATCGGACCGGTACGTGTGCGAGATCTGCAATCAGGGGTTCCAGAGAGACCAGAACCTGCAGATGCACAGACGGAGGCACAAAGTGCCATGGAAGCTGCTTAAGCGGGAGACTCCGGTGGTGAGGAAGCGGGTGTTCGTGTGCCCCGAGCCCACCTGCTTGCACCACGACCCCTGCCACGCCCTCGGCGACCTCGTCGGCATCAAGAAGCACTTCCGCCGGAAGCACAGCAACCACAAGCAATGGGTCTGCCACCGCTGCTCCAAGGCCTACGCCGTCCAGTCCGATTACAAGGCCCACCTCAAGACCTGTGGCACCCGCGGCCACTCCTGCGACTGTGGCCGCGTCTTCTCCAGGGTGGAGAGCTTCATTGAACACCAAGACGCGTGCAACATGGGGCGTCTCCGGCCGGAGTCACAGCCGCAGCAACCGGCCTGCCTCTCTCGAACCGCTTCTAGCCCGAGCCCCTCAAGCGAAACCAATTTCAGCACCGGTCCGGCCTGGCCTCCTCCGGGTCTGGTCATCCCAAAGCCGGCCGAGCCCACATTCTTCCACAACAACCCTACTGCTGATCAAACCTCGGCCAAGACCAACAATCATAACAAAGTCTTCCCAAACTTGGACCTTCAGCTCTCAACCGCCACTCCCAACGACGTCGCAAGGGACGAAACGCATTCCACCCAGTTACAACTCTCGATCGGGTCGTCGGAGATCAGCGAGAAAAACGAATCGAATAGGAACTCATCACCCAAGGAGAGCAGTAACAGCAGCGAGAAGCCACCGGGTGCCGTGGCGGCGTTAATGGCGGAGAAAGTGTATGCCGAGGAGGCGAGGAAGGAAGCAAAGAGGCAGATGGAGGTGGCGGAGCAAGAGTTCGCGAACGCCAAGAGAATAAGGCAGCAAGCTCAAGCGGAACTGGACAAAGCCTACGCGTTGAAAGAGCAGGCGATCAAACAGATCAATTCCACTATGCTTCAGATCACTTGCCACGCTTGTAAGCAACAGTTTCAACAGCAAGCGCGCAAATTAATAACGGAAGGTGGCCCAGTATTAGAGAACAATAACGGCAAAGAAAACCACTAA 1221 0.5725 MSVPSTEQFSSAENGTSTTTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCHRCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPESQPQQPACLSRTASSPSPSSETNFSTGPAWPPPGLVIPKPAEPTFFHNNPTADQTSAKTNNHNKVFPNLDLQLSTATPNDVARDETHSTQLQLSIGSSEISEKNESNRNSSPKESSNSSEKPPGAVAALMAEKVYAEEARKEAKRQMEVAEQEFANAKRIRQQAQAELDKAYALKEQAIKQINSTMLQITCHACKQQFQQQARKLITEGGPVLENNNGKENH 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1266 406 MobiDBLite consensus disorder prediction 261 306 - -
Dere01g1266 406 Gene3D Classic Zinc Finger 39 124 - -
Dere01g1266 406 MobiDBLite consensus disorder prediction 231 248 - -
Dere01g1266 406 SMART c2h2final6 92 122 IPR013087 -
Dere01g1266 406 SMART c2h2final6 51 73 IPR013087 -
Dere01g1266 406 SMART c2h2final6 128 155 IPR013087 -
Dere01g1266 406 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Dere01g1266 406 MobiDBLite consensus disorder prediction 182 211 - -
Dere01g1266 406 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 9 375 IPR031140 -
Dere01g1266 406 MobiDBLite consensus disorder prediction 1 24 - -
Dere01g1266 406 FunFam protein indeterminate-domain 12-like 30 98 - -
Dere01g1266 406 MobiDBLite consensus disorder prediction 180 248 - -
Dere01g1266 406 MobiDBLite consensus disorder prediction 1 38 - -
Dere01g1266 406 SUPERFAMILY beta-beta-alpha zinc fingers 48 74 IPR036236 -
Dere01g1266 406 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 73 IPR013087 -
Dere01g1266 406 MobiDBLite consensus disorder prediction 261 308 - -
Dere01g1266 406 Coils Coil 310 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1266 Dere-ChrDere01 25173636 25175735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1266 13 386 C2H2 Transcription Factor Family AT2G01940 58.500 3.10e-146 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere01g1266 None None None