Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1260 ATGGGAGAGCGAAATAAGTTAAATCAAGTGGTTGGGACAAGTGACAAAAGCTTCGCTTTCTCTAAAAGTTCACAGGATGGTTTGCTCGATGTAGATTCATGGAAGTTCAATCCTGTTAATGGTCCTGTGGAGCCTTTCCAAAATGACGTTGGTAGTAGTTCCAATAATAGTTTGAAGGCCCCATCATCTCAGCAATCAAAATATCAAACAACTGCAGCTCTTGATGTGGCCAAAACCATTGTAAAATCTGGAGAGGAAAGTATTGTTCCTACTGATAAGAAAGCCTCATGGCTTGGAAGTAGTAGTAGAGTCTTTGTGGAACAAAAACATGAAAGTTTGCAAGCTAAAGAACCGAGGGAACCTGATCAGCAGCTTAAATATAACAATTCATCTTATAAAGAGAATTTTGCAGATAATCCCTGGTCAAAATCTGATGAGAATGTGAATTCATCTTCAGACATTTGGAGAGATTGTTCTGTGAAGACTGTTTTCCCCTTTTCTATGGGTGATGTATCTGCAAGCTATGACAATGCAACTTATACAGACAAAAAGGAGGAAAAAAGAAGGGCAGAAATAAGTGATATACGTGCATCAATAAAAGAGCAAGTGGATGAAGTGGGCAGAGCTATTTACTTAGGCAAGTCACAAGGCAGTTCAGAACAGAAGACCATTGGCAGCTTAAGTTTTCCTTTTGTGCCTGGGAATCAGAAGGAAGAATTGCCTAGGCTTCCTCCTGTTAAACTCAAGTCAGAGGATAAGCCTTTGGCTATTAACTGGGAGGAAAAGTTTGAGCGTGATGGACCTTCTTCAAGAATCGCTGGTGCTGATGGCTCCTTAATCATAGGGTCATATCTGGATGTGCCAGTTGGACAAGAAATTAATCCCGCAGGTATGAGGAGGGCTGCAGGGGGCAGTTGGCTATCTGTAAGTCAAGGGATTGCTGAAGATACATCTGATCTTGTGTCTGGTTTTGCTACAGTTGGTGATGGATTGAGTGAATCTGTTGACTATCCAAATGAGTATTGGGACTCTGATGAATATGATGATGATGATGATGTTGGGTACATGAGACAACCTATTGAGGATGAGACCTGGTTTTTGGCGCATGAAATTGATTATCCAAGTGATAATGAAAAGGGGAATGGCCATGGGAGTGTTCCAGATCCTCAGGATAGAGGTCCAGCTAAAGATGAGGATGATGATCAATCTTTTGCTGAGGAGGATTCTTATTTCTCTGGAGAGCAGTATCTGCAAGCAAAGAATGTTGAACCAGTGACAGCTTCAGATGATCCTATTGGTTTAACAGTGACTGAAGTGTATGACAGGACTGATGAGGATGATCTTATGGCTCAATATGATGGGCAATTGATGGATGATGAAGAACTGAATCTGATGCCTGCCGAACCCGTTTGGCAGGGCTTTGTCACTCAGACAGATGAACTAATCATGTTAGGAGAAGGAAAGGTTCTGAATGAGGGTGGAAGATTGCGACTTGAGGATATTTGTATGGATGATGATCAGCACTGTTCAGTTAGGTCAATTGGTGTGGGGATCAACAGTGATGCTGCAGATATGGGCAGTGAAGTGCGTGAAAGTTTGGTTGGTGGTAGCAGTGAAGGTGATATAGAATATTTCTGTGACCGTGATGTTGGACTTGGTGGCTCCAGACACTCTCAACATGATTTGGATAAGAGGTTGTCTAATAAATTGAACAAATATAAGAAGAAAAATGATAAGAGTGAGTCAAATAAACATGTGATTGAGGATGATAAGGGTGCATGCTTGCAGATGAAAATTCATACTGATGGGAGCTTCTCATTTCCTCTATCGCTGAAAGATGGCCAGACGATTCAGGCTGGCTCTAGTAAACCCCTGTGGTCAAATTGCAATGTTGATGAGAATGATGGCTGTCTTAATGCGTCTGTGGGATCTGATGATATGCTTGCTTTATGGAGGAGAAAGAGCAGTGATTCTTCACCCATGAAAAGTTCAAGGGATGAAAATAATGCTAATGTGGTAAGATCCTGTAACTCTTCTCCAGCAGTTTCAAATTACGGATATACTGAAAAAGAGCATGTCAAGCTAGAAGAGGATGAAAAGGTTGGCATTGCAAGGGAAGAAGATCTAGGGGCATCTCTAGAGGATGAAGAGGCTGCTGCTGTACAAGAGCAAGTAAGACAAATAAAGGCTCAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGGAAAAACAGAACTGGCTTTGAGGAAGACAAGAATTTCCATGTTGTTTTGAATTCTGTAATAGCTGGGCGCTATCATGTCACTGAGTATCTTGGATCTGCTGCATTCAGCAAAGCTATACAGGCTCATGACCTGCATACTGGCATGGATGTTTGTGTCAAAATTATAAAGAACAACAAAGACTTTTTTGACCAAAGCCTTGATGAGATCAAACTTCTCAAGTATGTCAACAAGCATGATCCTGCAGACAAGTATCACATTCTTCGGTTATATGATTATTTCTATTATCGAGAACATTTGTTAATAGTATGTGAACTACTTAAAGCGAACTTATATGAGTTCCATAAATTTAATAGAGAATCAGGGGGGGAAGTGTACTTCACAATGCCAAGATTGCAGTCAATTACCATTCAATGTTTGGAAGCACTTCAGTTTCTGCATAGCCTTGGACTAATACACTGTGACTTGAAGCCAGAGAATATTTTGGTAAAAAGCTATAGTAGATGTGAGGTGAAGGTCATTGATCTTGGGAGTAGTTGTTTTGAGACAGATCACCTTTGTTCGTATGTTCAGTCAAGGTCTTATCGTGCTCCAGAGGTTATTTTAGGGCTTCCATATGATAAGAAGATTGATATCTGGTCACTTGGCTGCATTTTGGCAGAACTTTGTACTGGCAATGTCCTCTTCCAAAATGATTCACCTGCAACATTACTTGCTCGAGTGATTGGCATTATTGGTCCAATTGATCAAAGTATGCTTGCCAAAGGAAGGGACACATACAAGTATTTCACCAAAAATCATATGCTTTATGAAAGGAATCAGGAAACCAACAGGTTAGAGTACCTGATTCCAAAGAAGACATCCTTGAGGCATAGATTGCCAATGGGAGATCAAGGCTTCATTGACTTTGTTGCCCATTTGCTTGAGATTAATCCAAAGAAGCGGCCTTCTGCTTCTGAGGCTTTGAAGCACCCATGGTTATCATACCCTTACGAACCAATATCATCGTGA 3243 0.4089 MGERNKLNQVVGTSDKSFAFSKSSQDGLLDVDSWKFNPVNGPVEPFQNDVGSSSNNSLKAPSSQQSKYQTTAALDVAKTIVKSGEESIVPTDKKASWLGSSSRVFVEQKHESLQAKEPREPDQQLKYNNSSYKENFADNPWSKSDENVNSSSDIWRDCSVKTVFPFSMGDVSASYDNATYTDKKEEKRRAEISDIRASIKEQVDEVGRAIYLGKSQGSSEQKTIGSLSFPFVPGNQKEELPRLPPVKLKSEDKPLAINWEEKFERDGPSSRIAGADGSLIIGSYLDVPVGQEINPAGMRRAAGGSWLSVSQGIAEDTSDLVSGFATVGDGLSESVDYPNEYWDSDEYDDDDDVGYMRQPIEDETWFLAHEIDYPSDNEKGNGHGSVPDPQDRGPAKDEDDDQSFAEEDSYFSGEQYLQAKNVEPVTASDDPIGLTVTEVYDRTDEDDLMAQYDGQLMDDEELNLMPAEPVWQGFVTQTDELIMLGEGKVLNEGGRLRLEDICMDDDQHCSVRSIGVGINSDAADMGSEVRESLVGGSSEGDIEYFCDRDVGLGGSRHSQHDLDKRLSNKLNKYKKKNDKSESNKHVIEDDKGACLQMKIHTDGSFSFPLSLKDGQTIQAGSSKPLWSNCNVDENDGCLNASVGSDDMLALWRRKSSDSSPMKSSRDENNANVVRSCNSSPAVSNYGYTEKEHVKLEEDEKVGIAREEDLGASLEDEEAAAVQEQVRQIKAQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPADKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHSLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGPIDQSMLAKGRDTYKYFTKNHMLYERNQETNRLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLEINPKKRPSASEALKHPWLSYPYEPISS 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1260 1080 Pfam Protein kinase domain 769 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1260 1080 Coils Coil 721 741 - -
Dere01g1260 1080 MobiDBLite consensus disorder prediction 108 151 - -
Dere01g1260 1080 MobiDBLite consensus disorder prediction 40 69 - -
Dere01g1260 1080 ProSitePatterns Serine/Threonine protein kinases active-site signature. 895 907 IPR008271 GO:0004672|GO:0006468
Dere01g1260 1080 ProSiteProfiles Protein kinase domain profile. 769 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1260 1080 Gene3D Transferase(Phosphotransferase) domain 1 823 1071 - -
Dere01g1260 1080 PANTHER DUAL SPECIFICITY PROTEIN KINASE 305 1071 - -
Dere01g1260 1080 Coils Coil 563 590 - -
Dere01g1260 1080 SMART serkin_6 769 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g1260 1080 FunFam Putative serine/threonine-protein kinase dyrk2 763 850 - -
Dere01g1260 1080 MobiDBLite consensus disorder prediction 46 69 - -
Dere01g1260 1080 FunFam Serine/threonine-protein kinase ppk15 848 1072 - -
Dere01g1260 1080 MobiDBLite consensus disorder prediction 124 151 - -
Dere01g1260 1080 SUPERFAMILY Protein kinase-like (PK-like) 758 1073 IPR011009 -
Dere01g1260 1080 MobiDBLite consensus disorder prediction 653 675 - -
Dere01g1260 1080 MobiDBLite consensus disorder prediction 109 123 - -
Dere01g1260 1080 Gene3D Phosphorylase Kinase; domain 1 763 850 - -
Dere01g1260 1080 CDD PKc_DYRK_like 769 1071 - -
Dere01g1260 1080 MobiDBLite consensus disorder prediction 373 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1260 Dere-ChrDere01 25073221 25081164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1260 768 1066 MAP Kinase Gene Family AT5G19010 31.348 2.82e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Dere01g1260 Pkinase 1.6e-51 CL0016