Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1257 ATGAGATCCTTTCATCGTTTCTGGTTTCGAAACCCTGATGAAGATGAAGCCATCGATCTCCTTCTCGATCAGCTACACCAAGAATCTCGTTATCTCTCTTCTTGGAATTCTTTGATTTTATCCCAATTAATCTTTTCGATATGTGATTCCTCCTCAGACATACTGTGGGTGCTGAAAAATGGCATTGAAATCTACTATAATCCCCAATGCGCTGGAACGCCGGGTGGAGCATTTTTGAAGCCGGTATCTGATTCTGAAGTATCACACTTCGGAAGCTGTGGGCTAACAGGAAGTAGATGGATCATGGAAATGATTTTGCAGTTGAAGAATAGGCTGACAACGATAATTCTGTTCAAGCTTCATCATTTAAGCAAAGCAGACTCCATTGACCTAGGTTTCTCGCTTGTTAATTGGTTGGAAGAAGAGGCTGCACATTTGGTTGTTATGTTTGTTGACGAATCTTTTAAGACCCCAATAAAAGCAGAGTACATATGTGCTAAATGTGTTGCCTTTCCGTTTCAATTCAGACTGATGGTGGGTGAAAGATTTCCCTCACTTTTTAAACAAGCAATTTCTGCAATTAGGAGGAAAGGCATTGACGTCTTAAACATGAAGGCTGGCTTTAAAGAAAAGAGACGGGTGCAAGCAAAATTAAGGGAGATCAATTCAGAAGTGGAGAAGGGATATCATAACCCTAATCTCATATTAGGGTTTTTGTTGCTATATATAGTTTTTGCCGTGCTTAGCTTGTTTCTAGGTAGAGAGATATCAGATAATATGTGCAGTAGAGGCCATTGGAGGCCAGCCGAGGATGAGAAACTTCGAGAGTTGGTGGAACGCTATGGACCTCATAATTGGAACGCCATAGCTGAAAAGCTTCGAGGAAGATCAGGGAAGAGCTGCAGGTTGAGGTGGTTCAATCAACTGGACCCAAGAATTAACAGGAGTCCTTTCACAGAGGAGGAAGAAGAGAGGCTTCTTGCTTCTCACAGAATCCATGGGAATAGATGGGCTGTGATTGCAAGGCTTTTTCCAGGACGCACTGATAATGCTGTCAAGAATCACTGGCATGTCATGATGGCCAGGATTCGCCGAGAAAGGTCGAAGCTTTATGCAAAACGGCCTCCTCATCATCAGACCACAAAGTGTTCTCCAGAACGAGATCAACAGGATCATCAACACACAAACTATGAAACAACAAGGAGTAGTAGTAGTCTTCTCCCTTCGTTTGTTGAGAAATACTACGACAAGCATGGCTTCCCTTATTGTGTCACATATAACCCTTTCCTCCAATTTCCCAACAAGTTTCATTTTCAACATCCAATTTCCTGTTCAGCAATGCTTCATGATAGAAGTCAATCAGTTGAGTTCTATGATTTTCTTCAAGTAAACACTGATTCTAATAGAAGCGAGGTAACAGACAATGCCCGAAGGGAAGATGAGGAAGTGAATCAAGAAGCTGAACATGAGGGACAACAGAACAAGGAAGGTGTTCCATTTATTGATTTTTTGTCTGTTAATGGAAGCTCCTAA 1533 0.4175 MRSFHRFWFRNPDEDEAIDLLLDQLHQESRYLSSWNSLILSQLIFSICDSSSDILWVLKNGIEIYYNPQCAGTPGGAFLKPVSDSEVSHFGSCGLTGSRWIMEMILQLKNRLTTIILFKLHHLSKADSIDLGFSLVNWLEEEAAHLVVMFVDESFKTPIKAEYICAKCVAFPFQFRLMVGERFPSLFKQAISAIRRKGIDVLNMKAGFKEKRRVQAKLREINSEVEKGYHNPNLILGFLLLYIVFAVLSLFLGREISDNMCSRGHWRPAEDEKLRELVERYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVMMARIRRERSKLYAKRPPHHQTTKCSPERDQQDHQHTNYETTRSSSSLLPSFVEKYYDKHGFPYCVTYNPFLQFPNKFHFQHPISCSAMLHDRSQSVEFYDFLQVNTDSNRSEVTDNARREDEEVNQEAEHEGQQNKEGVPFIDFLSVNGSS 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1257 510 MobiDBLite consensus disorder prediction 468 497 - -
Dere01g1257 510 SUPERFAMILY Homeodomain-like 263 356 IPR009057 -
Dere01g1257 510 SMART sant 314 362 IPR001005 -
Dere01g1257 510 SMART sant 262 311 IPR001005 -
Dere01g1257 510 MobiDBLite consensus disorder prediction 379 395 - -
Dere01g1257 510 ProSiteProfiles Myb-like domain profile. 310 360 IPR001005 -
Dere01g1257 510 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 258 309 IPR017930 -
Dere01g1257 510 Gene3D - 263 314 - -
Dere01g1257 510 Pfam Myb-like DNA-binding domain 266 326 - -
Dere01g1257 510 CDD SANT 266 307 IPR001005 -
Dere01g1257 510 CDD SANT 317 360 IPR001005 -
Dere01g1257 510 ProSiteProfiles Myb-like domain profile. 263 309 IPR001005 -
Dere01g1257 510 MobiDBLite consensus disorder prediction 471 495 - -
Dere01g1257 510 MobiDBLite consensus disorder prediction 369 402 - -
Dere01g1257 510 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 310 364 IPR017930 -
Dere01g1257 510 Gene3D - 316 396 - -
Dere01g1257 510 PANTHER MYB PROTEIN-RELATED 263 392 - -
Dere01g1257 510 FunFam MYB transcription factor 263 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1257 Dere-ChrDere01 25017912 25028635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1257 260 510 MYB Transcription Factor Family AT1G17950 55.344 8.92e-83 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere01g1257 Myb_DNA-bind_6 3.1e-16 CL0123