Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1255 ATGACAGCCTTGCAGCGTGGGCCTCGAAACATTTACCGAAAGTGCGAACGGCACATGGAGAAGGACTTGAATACTTGGTGCATCACTCCTCTCCCAGCAAAGAAACTCTCCAAAATGGTGATCGCATCCACAGTCAAAGAACCAGAAGACGCAGGGCGATTCTACTCCACTTTTGCTTCCAGATATGTGCGAGACCCAGTTCCCAAGTTTAGGATGCCGGCGAATTCCATACCCAAGGATGCAGCGTATCAGATTATAAACGACGAGTTGATGCTGGACGGTACACCCAGACTTAACTTGGCGTCCTTTGTCACCACTTGGATGGAGCCTGAGTGCGAAAAGCTCATCATGGCCTCCCTTAACAAGAACTACGTTGACATGGACGAGTACCCCGTGACCACTGAGCTCCAGAACCGGTGCGTGAATATGATAGCGCATCTGTACCATGCTCCTATTGGAGAAGATGAGGCTGCAGTGGGTGTGGGAACTGTGGGGTCTTCAGAGGCAATCATGTTGGCAGGTCTTGCTTTCAAAAGAAAATGGCAGATAAAGAGAAAATCAGAAGGCAAACCATATGATAAACCCAACATTGTTACTGGAGCTAATGTGCAGGTTTGTTGGGAAAAATTTGCGAGGTACTTTGAGGTAGAGCTTAAGGAGGTGAAACTCAGTGAGGGATATTATGTGATGGACCCAGTGAAAGCAGTGGAAATGGTGGATGAGAACACCATATGTGTTGCAGCAATTCTGGGGTCAACTCTAACCGGAGAGTTTGAAGATGTGAAGCTGCTTAATGAGCTTCTTACAAAGAAGAACGAGGAGACAGGGTGGAATACACCAATACACGTGGATGCAGCCAGTGGAGGGTTCATTGCTCCATTCCTGTACCCTCATCTAGAGTGGGATTTCCGTTTGCCATTGGTGAAGAGCATCAACGTTAGTGGTCACAAGTATGGTCTTGTGTACCCTGGTGTCGGCTGGGTTGTCTGGAGGACTAAGGATGACTTGCCTGATGATCTTGTCTTCCACATCAACTATCTTGGGTCTGATCAGCCCACTTTCACCCTCAATTTCTCTAAAGGCTCCAGTCAAATAATTTCTCAATATTACCAGTTTATTCGGCTTGGCTTTGAGGGCTACAAAAACATCATGGAGAATTGCTTGGGGAACGCAAGAACATTGAAGGAAGGAATAGAGAAAACAGGGCGGTTCAACATTCTGTCCAAGGATGTAGGGGTGCCTCTGGTAGCCTTCTCCCTGAAAGACAGCAGCAAGCACACTGTGTTCGAGATATCAGACCAGCTCCGAAAGTTCGGGTGGATTGTTCCGGCCTACACAATGCCGGCAAATGCGCAGCACATCGCGGTTCTCCGGGTTGTGATCCGGGAGGATTTCAGCCGGAGCTTGGCCGAGAGACTTGTGGCGGACATTGACAAAGTTGTGAAGCTCTTGGACACACTTCCGAGCCTTGTGTCCACCAAAGATGCACATGTCACTGCTATAACTAGTGAGACAGATCATGAAAAGGTTAAGAAGAGTGCAATGGAGATTCAGGCTGAGGTTACCATGTACTGGAAGAGGCTTGTGCATGGCAAGAAAAATGGAGTGTGCTAG 1614 0.4814 MTALQRGPRNIYRKCERHMEKDLNTWCITPLPAKKLSKMVIASTVKEPEDAGRFYSTFASRYVRDPVPKFRMPANSIPKDAAYQIINDELMLDGTPRLNLASFVTTWMEPECEKLIMASLNKNYVDMDEYPVTTELQNRCVNMIAHLYHAPIGEDEAAVGVGTVGSSEAIMLAGLAFKRKWQIKRKSEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLTGEFEDVKLLNELLTKKNEETGWNTPIHVDAASGGFIAPFLYPHLEWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRTKDDLPDDLVFHINYLGSDQPTFTLNFSKGSSQIISQYYQFIRLGFEGYKNIMENCLGNARTLKEGIEKTGRFNILSKDVGVPLVAFSLKDSSKHTVFEISDQLRKFGWIVPAYTMPANAQHIAVLRVVIREDFSRSLAERLVADIDKVVKLLDTLPSLVSTKDAHVTAITSETDHEKVKKSAMEIQAEVTMYWKRLVHGKKNGVC 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1255 537 FunFam Glutamate decarboxylase 106 400 - -
Dere01g1255 537 NCBIfam glutamate decarboxylase 56 484 IPR010107 GO:0004351|GO:0006536|GO:0030170
Dere01g1255 537 Gene3D - 106 400 IPR015421 GO:0003824
Dere01g1255 537 FunFam Glutamate decarboxylase 44 105 - -
Dere01g1255 537 SUPERFAMILY PLP-dependent transferases 54 483 IPR015424 -
Dere01g1255 537 CDD DOPA_deC_like 99 479 - -
Dere01g1255 537 PANTHER GLUTAMATE DECARBOXYLASE 39 537 IPR010107 GO:0004351|GO:0006536|GO:0030170
Dere01g1255 537 Pfam Pyridoxal-dependent decarboxylase conserved domain 73 421 IPR002129 GO:0016830|GO:0019752|GO:0030170
Dere01g1255 537 Gene3D - 401 488 - -
Dere01g1255 537 FunFam Glutamate decarboxylase 401 488 - -
Dere01g1255 537 Gene3D - 39 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1255 Dere-ChrDere01 24993120 25000953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1255 39 537 Calmodulin-binding Proteins AT3G17760 78.088 0.0 815