Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1248 ATGGAGTACGCGAGCGGAGGCGGCGGTGGGTCTCCCGGTGACCATCACCATCACCACCACGACGCTTCTGATTCCCAGAAGAGCAAGAAGCGATACCATCGTCACACTGCTAACCAGATTCAAAAGCTTGAATCGATGTTCAAGGAGTGCCCCCACCCGGATGAAAAGCAGAGGTTGCAGTTAAGCAGAGAGCTAGGCTTGGCCCCCAGGCAGATCAAGTTCTGGTTCCAGAACAGGAGGACCCAGATGAAGGCTCAGCACGAGAGATCAGATAACTGTGCACTCCGAGCAGAGAATGACAAGATTCGATGTGAGAACATTGCCATCAGAGAGGCCCTCAAAAACGTCATTTGCCCTTCGTGTGGTGGCCCTCCTCTCCACGAGGATTCCTATTTTGACGAGCAAAAGTTGCGTTTGGAGAATGCCCAATTGAAAGAAGAGCTTGATAGAGTATCTAGCATTGCAGCTAAATACATAGGAAGACCAATTTCTCAACTCCCACCTGTTCAGCCTATTCATATATCATCCTTGGAATTGTCAATGGGAAGCTTTGGAAGCCAAGGGTTGATAGGTGGCCCTTCTCTTGATCTTGATCTTCTCCCGGGAAGTTCTTCATCTGTTCCAAGCTTGCCTTATCAGGTGGCTTCCTTTTCGGACATAGATAAGTCCATCATGTCCGACATTGCCGGGAACGCCATGGAAGAGTTACTCAGGCTTTTGCAGACTAATGAATCCTTGTGGATGAAGTCAAGCACGGATGGGAGAGATGTTCTTAATCTGGACACCTACGATAACATGTTCCCCAGAGCAAATAGTCACATGAAGAATCCAAATATTCGGATTGAAGCGTCTCGTGACTCAGGAGTTGTGATTATGAATGGCTTGACTTTGGTTGACATGTTTATGGACCCTAACAAGTGGACGGAGCTTTTTCCCACAATAGTCTCAATGGCAACTACGATTAAAGTGATATCTTCTGGGATGCTGGGTGGCCATAGTGGCTCTTTGCAATTGATGTATGGAGAGTTTCAAGTGCTTTCTCCACTTGTTCCAACTCGAGAGTTCTACTTTCTTCGATACTGTCAGCAAATTGAGCAAGGCTTATGGGCGATAGTGGATGTTTCATATGACTTTCCACAAGATAACCAGTTTGCTCCTCAGTTTCGGTCTCATCGGCTTCCTTCTGGCTGCTTGGTCCAGGATATGCCTAACGGGTATTCCAAGGTGACTTGGGTTGAACATGTAGAGATTGAAGATAGAACACCAACTCATCGGCTGTATAGAAACCTTATCAACAGTGGGTTGGCATTTGGAGCAGAAAGGTGGCTTACTACTCTTCAGAGAATGTGTGAAAGATTCGCTTGTTTGATGGTTACAGGCAATTCTACCCGCGACCTTGGAGGAGTGATTCCATCGCCAGAGGGCAAGAGGAGCATGATGAAACTAGCACAAAGGATGGTCACCAATTTCTGCACAAGCATCAGCGCATCCAACGGCCACAGATGGACAACACTCTCCGGGCTGAACGAGGTCGGCGTTAGAGTCACAGTCCACAAGAGTTCTGATCCCGGCCAACCCAACGGCGTGGTGCTGAGTGCAGCCACTACTATCTGGCTCCCCATATCTCCCCAAACTCTCTTCAATTTCTTCAAGGATGAAAGAAGAAGACCTCAGTGGGATGTTCTTTCAAACGGGAATGCTGTACAAGAAGTTGCTCATATAGCTAATGGGTCTCATCCTGGGAACTGCATATCTGTTCTTCGGGCCTTCAACACGAGTCAGAACAACATGTTGATACTCCAAGAGAGCTGCATAGACTCCTCAGGATCCCTTGTGGTGTACTGCCCAGTTGATCTTCCGGCCATCAACATTGCAATGAGCGGGGAGGACCCGTCGTACATTCCTTTGCTACCGTCCGGGTTCACTATCTCGCCGGACGGGCAACCCGACGGAGGAGGAGGAGCCGGAGATGGAGCATCAAGCAGCTCGAGCACGCAGAGGAGGTCAGGTGGTTCACTCCTCACAGTGGCGTTTCAGATTCTGGTGAGCAGCTTGCCATCTGCGAAGCTGAACTTGGAGTCAGTGACCACCGTTAATAACCTCATCGGCACCACTGTCCAGCAAATTAAGGCTGCCTTGAATTGTCCTCCTTCCTGA 2157 0.49 MEYASGGGGGSPGDHHHHHHDASDSQKSKKRYHRHTANQIQKLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERSDNCALRAENDKIRCENIAIREALKNVICPSCGGPPLHEDSYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLELSMGSFGSQGLIGGPSLDLDLLPGSSSSVPSLPYQVASFSDIDKSIMSDIAGNAMEELLRLLQTNESLWMKSSTDGRDVLNLDTYDNMFPRANSHMKNPNIRIEASRDSGVVIMNGLTLVDMFMDPNKWTELFPTIVSMATTIKVISSGMLGGHSGSLQLMYGEFQVLSPLVPTREFYFLRYCQQIEQGLWAIVDVSYDFPQDNQFAPQFRSHRLPSGCLVQDMPNGYSKVTWVEHVEIEDRTPTHRLYRNLINSGLAFGAERWLTTLQRMCERFACLMVTGNSTRDLGGVIPSPEGKRSMMKLAQRMVTNFCTSISASNGHRWTTLSGLNEVGVRVTVHKSSDPGQPNGVVLSAATTIWLPISPQTLFNFFKDERRRPQWDVLSNGNAVQEVAHIANGSHPGNCISVLRAFNTSQNNMLILQESCIDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTISPDGQPDGGGGAGDGASSSSSTQRRSGGSLLTVAFQILVSSLPSAKLNLESVTTVNNLIGTTVQQIKAALNCPPS 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1248 718 Gene3D - 226 454 IPR023393 -
Dere01g1248 718 SUPERFAMILY Homeodomain-like 8 86 IPR009057 -
Dere01g1248 718 FunFam Homeobox-leucine zipper protein HDG1 16 102 - -
Dere01g1248 718 SUPERFAMILY Bet v1-like 219 453 - -
Dere01g1248 718 ProSiteProfiles 'Homeobox' domain profile. 26 86 IPR001356 GO:0003677
Dere01g1248 718 FunFam Homeobox-leucine zipper protein GLABRA 2 227 451 - -
Dere01g1248 718 MobiDBLite consensus disorder prediction 644 668 - -
Dere01g1248 718 ProSitePatterns 'Homeobox' domain signature. 61 84 IPR017970 GO:0000981|GO:0006355
Dere01g1248 718 ProSiteProfiles START domain profile. 218 455 IPR002913 GO:0008289
Dere01g1248 718 Gene3D - 14 100 - -
Dere01g1248 718 Pfam Homeodomain 29 84 IPR001356 GO:0003677
Dere01g1248 718 Pfam START domain 228 452 IPR002913 GO:0008289
Dere01g1248 718 MobiDBLite consensus disorder prediction 1 36 - -
Dere01g1248 718 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 27 714 IPR042160 -
Dere01g1248 718 SUPERFAMILY Bet v1-like 473 710 - -
Dere01g1248 718 Coils Coil 134 154 - -
Dere01g1248 718 SMART HOX_1 27 90 IPR001356 GO:0003677
Dere01g1248 718 MobiDBLite consensus disorder prediction 12 28 - -
Dere01g1248 718 CDD START_ArGLABRA2_like 222 451 - -
Dere01g1248 718 SMART START_1 227 452 IPR002913 GO:0008289
Dere01g1248 718 CDD homeodomain 29 87 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1248 Dere-ChrDere01 24897700 24900958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1248 24 716 Homeobox Transcription Factor Family AT1G73360 68.571 0.0 961
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere01g1248 START 4.9e-51 CL0209