Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1247 ATGCAGGGTCAAATAGAAGGCACAAAGTCAAACAACTGTGGCACAGCCAGTAACAGCCATTCCCATGATGGCACAAAATCTGGAAATGTTGTCTGGTTGAAGGATATAGCCACTACGGGAGACAATCTTACTCCCAAGGCTAGGAAACCATATACCATTACTAAGCAAAGGGAAAAGTGGACAGAGGAGGAGCATCAGAAGTTCCTTGAAGCTTTGAAATTGTATGGCCGTGGTTGGCGTCAAATTGAAGAACACGTAGGTACCAAAACTGCAGTTCAGATTCGGAGCCATGCTCAGAAGTTCTTCTCCAAGGTAGTACGGGAATCTGAGGGCAGCACTGAAAGTTCTATAAAGCCAATTGACATACCTCCTCCTCGGCCAAAACGGAAACCCCTGCATCCATATCCCCGTAAATCAGTTGACTCCTTTAAAGGACACTCGATACTGAATGAACCAGAAAGATCTCCATCCCCAAACCTGTCAGCCACAGTGAAAGCTACGCAATCTCCGACTTCAGTGTTATCTGCATTTGGTTCAGAAGCATTCGGATCAGCATTTTCTGAGCAGACTAATAGATGTCTTTCTCCAAATTCTTGCACTACTGACATCCATTCGGTCAGATTATCACCCGTTGGAAAGGAAAATGAATGGATTACATCCAACTCATCCGAGGTGGAAGAGAAAGGATATCTAGCTTCAGTCCCTATATTTACTGGTTTGAATACAGACCTCTCCCTGAAGTCCGAGTTGTCTCCCAAGGAAACTGAGATATCTACTGAAGATGCTGCTAATGTGCCACATCTCACGAGCATTAAGCTTTTCGGAAGAACTGTCTCCTTAGTAAATAATCAGAAGTCAATGAATCTAGATATGGAAAATATTAAGTCAATTATATATAAGTCTGCTGAAGTGGATGTTGTTGAGAATGAGAAGCAAAGCCAAGCACGGCCATCCAACAAACTAGATACACCATTATCCCTGGCCATGTGTAATAGTAACTGCTATACAACGCCTGCTGGAGTTAAAGCGAAATGCATAGAATACCCAAAGGAGAACCCGTGCTTTGTTGAATCCGAATCTGATGCTTCCTTGTCAAGCTGGAATTCACGCCAAGGTCTTCCAGTTTTGAATCTGGGCCCATGTAACGAAATTCTAAATCCTACGCCGCTTCATCCTGAGAGAATGAGAGAGAAGGAAAGTCAATGCACCAATTCTAACGCTGAATCAGTTAATGAAATGGAAAATGGCGACAAGAACTATGATGCCATTGATTCTCAATGTCAATCATCTCATGGTGAGGGTGGAATTGCCCCCCTCAAATCTAGAAGGGGGTTTGTACCATATAAAAGATGTTTAGCTGAGAGGGATGCGAATACGCTTGTTGCCGCACTGGAAGAAAGGAAGGGTCAACGGACTCGAGTGTGCTCATAG 1431 0.4375 MQGQIEGTKSNNCGTASNSHSHDGTKSGNVVWLKDIATTGDNLTPKARKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVRESEGSTESSIKPIDIPPPRPKRKPLHPYPRKSVDSFKGHSILNEPERSPSPNLSATVKATQSPTSVLSAFGSEAFGSAFSEQTNRCLSPNSCTTDIHSVRLSPVGKENEWITSNSSEVEEKGYLASVPIFTGLNTDLSLKSELSPKETEISTEDAANVPHLTSIKLFGRTVSLVNNQKSMNLDMENIKSIIYKSAEVDVVENEKQSQARPSNKLDTPLSLAMCNSNCYTTPAGVKAKCIEYPKENPCFVESESDASLSSWNSRQGLPVLNLGPCNEILNPTPLHPERMREKESQCTNSNAESVNEMENGDKNYDAIDSQCQSSHGEGGIAPLKSRRGFVPYKRCLAERDANTLVAALEERKGQRTRVCS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1247 476 MobiDBLite consensus disorder prediction 123 140 - -
Dere01g1247 476 PANTHER SWI/SNF COMPLEX-RELATED 11 306 - -
Dere01g1247 476 SUPERFAMILY Homeodomain-like 51 105 IPR009057 -
Dere01g1247 476 Gene3D - 59 106 - -
Dere01g1247 476 MobiDBLite consensus disorder prediction 106 164 - -
Dere01g1247 476 SMART sant 56 104 IPR001005 -
Dere01g1247 476 FunFam protein REVEILLE 6 isoform X1 59 107 - -
Dere01g1247 476 MobiDBLite consensus disorder prediction 1 26 - -
Dere01g1247 476 CDD SANT 59 102 IPR001005 -
Dere01g1247 476 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 106 IPR017930 -
Dere01g1247 476 Pfam Myb-like DNA-binding domain 57 100 IPR001005 -
Dere01g1247 476 ProSiteProfiles SANT domain profile. 55 106 IPR017884 -
Dere01g1247 476 MobiDBLite consensus disorder prediction 1 28 - -
Dere01g1247 476 NCBIfam myb-like DNA-binding domain, SHAQKYF class 55 104 IPR006447 GO:0003677
Dere01g1247 476 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1247 Dere-ChrDere01 24870364 24873430 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere01g1247 Myb_DNA-binding 8.8e-14 CL0123